C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pescadillo homolog 1, containing BRCT domain (zebrafish)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000020705 Pes1-201 ENSMUSG00000020430 10090 + 11:3963975-3980004 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020705
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020705 22.334±5.50 31.357±3.17 16.642±0.37 17.317±8.11 24.450±2.39 19.978±2.20 8.624±0.98 13.111±3.66 12.597±7.82 14.713±4.86 5.498±1.28 31.432±6.18 26.843±7.15 14.236±1.68

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006F8 CIL_0006F8_0002 CGP 11:3963975-3999326

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000463 ISS maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000466 ISS maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000793 IDA condensed chromosome
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 ISS nucleoplasm
GO:0005730 ISS nucleolus
GO:0005737 IEA cytoplasm
GO:0006364 IGI rRNA processing
GO:0007000 IMP nucleolus organization
GO:0008283 ISS cell proliferation
GO:0016020 IEA membrane
GO:0030687 ISS preribosome, large subunit precursor
GO:0033365 IMP protein localization to organelle
GO:0042254 IMP ribosome biogenesis
GO:0043021 IEA ribonucleoprotein complex binding
GO:0044822 IEA poly(A) RNA binding
GO:0051726 IEA regulation of cell cycle
GO:0070545 ISS PeBoW complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000335214 PES1-005 protein_coding Homo_sapiens 0 1748
ENST00000354694 PES1-001 protein_coding Homo_sapiens 0 1818
ENST00000402281 PES1-003 protein_coding Homo_sapiens 0 1766
ENST00000402284 PES1-004 protein_coding Homo_sapiens 0 1110
ENST00000405677 PES1-002 protein_coding Homo_sapiens 0 1766
ENST00000406208 PES1-010 nonsense_mediated_decay Homo_sapiens 0 859
ENST00000449745 PES1P2-001 processed_pseudogene Homo_sapiens 0 1251

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