C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: septin 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020486 Sept4 10090 + 11:87568903-87590539 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000018544 Sept4-001 87581041-87590539 protein_coding
  ENSMUST00000063156 Sept4-003 87581061-87590375 protein_coding
  ENSMUST00000107960 Sept4-005 87581061-87590539 protein_coding
  ENSMUST00000107961 Sept4-013 87578928-87589274 protein_coding
  ENSMUST00000107962 Sept4-002 87578401-87590539 protein_coding
  ENSMUST00000122067 Sept4-009 87578424-87590537 protein_coding
  ENSMUST00000122945 Sept4-011 87568903-87585241 protein_coding
  ENSMUST00000123081 Sept4-017 87578456-87586031 retained_intron
  ENSMUST00000127414 Sept4-015 87588868-87589994 retained_intron
  ENSMUST00000132723 Sept4-004 87578447-87590539 retained_intron
  ENSMUST00000133202 Sept4-010 87582209-87589041 protein_coding
  ENSMUST00000133638 Sept4-018 87578470-87590539 retained_intron
  ENSMUST00000134923 Sept4-007 87581074-87590539 retained_intron
  ENSMUST00000135175 Sept4-012 87578484-87585859 retained_intron
  ENSMUST00000136229 Sept4-006 87581069-87586031 retained_intron
  ENSMUST00000140398 Sept4-008 87578412-87589186 retained_intron
  ENSMUST00000143950 Sept4-016 87589477-87590539 processed_transcript
  ENSMUST00000148216 Sept4-014 87585225-87589864 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000063156ENSMUST00000107960ENSMUST00000107961ENSMUST00000107962ENSMUST00000122067ENSMUST00000122945ENSMUST00000123081ENSMUST00000133638ENSMUST00000134923ENSMUST00000136229ENSMUST00000140398ENSMUST00000143950
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000063156 N/A N/A N/A 80.204±0.00 3.423±1.01 2.080±0.00 3.534±0.00 3.474±0.08 1.687±0.26 30.927±0.18 1.866±0.61 12.234±11.34 24.282±22.12 31.962±0.00
ENSMUST00000107960 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 24.141±1.44
ENSMUST00000107961 N/A 6.847±0.85 N/A N/A N/A N/A N/A N/A 2.405±0.00 N/A N/A N/A N/A N/A
ENSMUST00000107962 9.406±0.00 N/A N/A 1.975±0.68 2.769±0.95 1.448±0.00 N/A N/A 1.128±0.01 N/A 1.893±0.95 N/A 3.477±0.00 N/A
ENSMUST00000122067 14.835±3.94 3.481±0.00 12.424±7.33 N/A 5.875±0.17 4.095±1.37 5.016±0.04 7.999±0.75 2.358±0.73 60.249±4.58 2.110±0.44 3.886±1.53 9.587±0.36 N/A
ENSMUST00000122945 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 52.532±0.00
ENSMUST00000123081 N/A N/A N/A N/A 2.169±0.00 1.880±0.11 3.134±0.34 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133638 10.710±4.15 2.281±0.00 4.108±0.00 N/A 3.266±0.51 2.530±0.32 3.725±0.23 4.485±1.18 1.129±0.17 21.047±0.03 1.253±0.17 3.299±1.44 47.929±0.00 N/A
ENSMUST00000134923 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.897±0.00 N/A N/A
ENSMUST00000136229 N/A N/A N/A N/A 2.584±0.00 2.733±0.00 N/A N/A 1.114±0.12 N/A N/A 2.098±0.00 N/A N/A
ENSMUST00000140398 N/A N/A N/A N/A N/A 2.820±0.50 N/A N/A N/A N/A N/A 2.630±0.19 N/A N/A
ENSMUST00000143950 N/A N/A N/A 169.814±0.00 N/A N/A N/A N/A N/A N/A N/A 34.223±0.00 101.366±42.03 171.766±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005525 IEA GTP binding
GO:0005739 IDA mitochondrion
GO:0007049 IEA cell cycle
GO:0007286 IMP spermatid development
GO:0007420 IMP brain development
GO:0030382 IMP sperm mitochondrion organization
GO:0031105 IEA septin complex
GO:0031398 IEA positive regulation of protein ubiquitination
GO:0031514 IMP motile cilium
GO:0036126 IDA sperm flagellum
GO:0042995 IDA cell projection
GO:0043065 IEA positive regulation of apoptotic process
GO:0048240 IMP sperm capacitation
GO:0051301 IEA cell division
GO:0097227 IDA sperm annulus
GO:2001244 IEA positive regulation of intrinsic apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010385 sept4a septin 4a protein_coding Danio_rerio
ENSG00000108387 SEPT4 septin 4 protein_coding Homo_sapiens

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