C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: FtsJ homolog 3 (E. coli)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020706 Ftsj3 10090 - 11:106249142-106256079 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000021048 Ftsj3-001 106249142-106256079 protein_coding
  ENSMUST00000126938 Ftsj3-006 106249899-106250698 retained_intron
  ENSMUST00000127803 Ftsj3-004 106253376-106253995 retained_intron
  ENSMUST00000143729 Ftsj3-003 106254292-106255796 retained_intron
  ENSMUST00000143884 Ftsj3-002 106254863-106255804 retained_intron
  ENSMUST00000154635 Ftsj3-005 106251009-106252554 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021048ENSMUST00000143729
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021048 7.983±1.59 4.076±1.02 9.796±0.32 13.069±6.50 4.790±1.40 2.969±0.44 3.483±0.34 4.464±0.84 12.554±8.84 3.954±0.58 8.072±0.77 14.255±17.37 32.500±22.94 15.073±14.47
ENSMUST00000143729 11.737±2.16 10.411±1.97 N/A N/A 5.695±0.83 3.762±1.11 N/A 3.388±0.52 3.599±0.00 3.191±0.00 N/A 9.009±1.59 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B9 CIL_0009B9_0002 VISTA 11:105834084-106435839
CIL_0006Q4 CIL_0006Q4_0002 CGP 11:106216926-106256079
CIL_0006Q9 CIL_0006Q9_0002 CGP 11:106249142-106263120

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000453 IEA enzyme-directed rRNA 2'-O-methylation
GO:0005515 IEA protein binding
GO:0005730 IEA nucleolus
GO:0008150 ND biological_process
GO:0008649 IEA rRNA methyltransferase activity
GO:0030688 IEA preribosome, small subunit precursor
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000076761 ftsj FtsJ homolog 3 (E. coli) protein_coding Danio_rerio
ENSG00000108592 FTSJ3 FtsJ homolog 3 (E. coli) protein_coding Homo_sapiens

Loading