Institute of Cardiovascular Regeneration Webtool Repository

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Accession	Transcript Name	Contained in Gene	Tax ID	Strand	Position	Biotype
Transcript Info
Description:	FtsJ homolog 3 (E. coli)
ENSMUST00000021048	Ftsj3-001	ENSMUSG00000020706	10090	-	11:106249142-106256079	protein_coding

Expression Patterns

Transcript ID	Adipose	Adrenal	Bladder	Brain	Breast	Colon	Heart	Kidney	Liver	Lung	Muscle	Ovary	Placenta	Testis
ENSMUST00000021048	7.983±1.59	4.076±1.02	9.796±0.32	13.069±6.50	4.790±1.40	2.969±0.44	3.483±0.34	4.464±0.84	12.554±8.84	3.954±0.58	8.072±0.77	14.255±17.37	32.500±22.94	15.073±14.47

Conserved Regions
Region ID	Sub-Region	Region Type	Position
CIL_0009B9	CIL_0009B9_0002	VISTA	11:105834084-106435839
CIL_0006Q4	CIL_0006Q4_0002	CGP	11:106216926-106256079
CIL_0006Q9	CIL_0006Q9_0002	CGP	11:106249142-106263120

Gene Ontology
GO ID	Evidence Type	GO Description
GO:0000453	IEA	enzyme-directed rRNA 2'-O-methylation
GO:0005515	IEA	protein binding
GO:0005730	IEA	nucleolus
GO:0008150	ND	biological_process
GO:0008649	IEA	rRNA methyltransferase activity
GO:0030688	IEA	preribosome, small subunit precursor
GO:0044822	IEA	poly(A) RNA binding

Homologs
ENSEMBL Accession	Gene Name	Biotype	Species	E-Value	Bit Score
ENST00000427159	FTSJ3-001	protein_coding	Homo_sapiens	0	2726
ENST00000577263	FTSJ3-008	retained_intron	Homo_sapiens	0	455
ENST00000579569	FTSJ3-007	nonsense_mediated_decay	Homo_sapiens	0	580
ENST00000580272	FTSJ3-017	protein_coding	Homo_sapiens	0	654
ENST00000580290	FTSJ3-009	retained_intron	Homo_sapiens	0	451
ENST00000580376	FTSJ3-018	retained_intron	Homo_sapiens	0	327
ENST00000581209	FTSJ3-015	protein_coding	Homo_sapiens	0	527
ENST00000582476	FTSJ3-006	retained_intron	Homo_sapiens	0	259
ENST00000583202	FTSJ3-014	retained_intron	Homo_sapiens	0	340
ENST00000584193	FTSJ3-010	nonsense_mediated_decay	Homo_sapiens	0	580

Loading