C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 46, member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020829 Slc46a1 10090 + 11:78465697-78472059 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000001126 Slc46a1-001 78465697-78471945 protein_coding
  ENSMUST00000146431 Slc46a1-002 78465750-78471622 nonsense_mediated_decay
  ENSMUST00000180786 Slc46a1-003 78470226-78472059 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000001126ENSMUST00000146431ENSMUST00000180786
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000001126 15.933±0.99 46.427±8.85 11.745±0.75 5.121±2.60 14.149±2.20 23.119±2.13 2.583±0.35 41.216±5.33 32.267±26.58 7.166±0.71 0.260±0.05 16.655±5.99 9.376±4.83 2.909±1.39
ENSMUST00000146431 N/A N/A N/A 8.072±0.00 N/A N/A N/A N/A N/A N/A 0.311±0.10 N/A 5.674±4.93 0.150±0.00
ENSMUST00000180786 N/A N/A N/A 2.223±0.00 N/A N/A N/A N/A N/A N/A 0.065±0.03 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003LU CIL_0003LU_0002 CGP 11:78465697-78497754

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005542 IEA folic acid binding
GO:0005737 IDA cytoplasm
GO:0008517 ISS folic acid transporter activity
GO:0009986 IEA cell surface
GO:0015232 IDA heme transporter activity
GO:0015350 IEA methotrexate transporter activity
GO:0015884 ISS folic acid transport
GO:0015886 IDA heme transport
GO:0016021 IEA integral component of membrane
GO:0016324 IDA apical plasma membrane
GO:0031526 IEA brush border membrane
GO:0051958 IEA methotrexate transport
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000026149 slc46a1 solute carrier family 46, member 1 protein_coding Danio_rerio
ENSG00000076351 SLC46A1 solute carrier family 46 (folate transporter), member 1 protein_coding Homo_sapiens

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