C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 46, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000001126 Slc46a1-001 ENSMUSG00000020829 10090 + 11:78465697-78471945 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000001126
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000001126 15.933±0.99 46.427±8.85 11.745±0.75 5.121±2.60 14.149±2.20 23.119±2.13 2.583±0.35 41.216±5.33 32.267±26.58 7.166±0.71 0.260±0.05 16.655±5.99 9.376±4.83 2.909±1.39

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003LU CIL_0003LU_0002 CGP 11:78465697-78497754

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005542 IEA folic acid binding
GO:0005737 IDA cytoplasm
GO:0008517 ISS folic acid transporter activity
GO:0009986 IEA cell surface
GO:0015232 IDA heme transporter activity
GO:0015350 IEA methotrexate transporter activity
GO:0015884 ISS folic acid transport
GO:0015886 IDA heme transport
GO:0016021 IEA integral component of membrane
GO:0016324 IDA apical plasma membrane
GO:0031526 IEA brush border membrane
GO:0051958 IEA methotrexate transport
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000582590 SLC46A1-004 retained_intron Homo_sapiens 0 1013
ENST00000584426 SLC46A1-011 protein_coding Homo_sapiens 0 451
ENST00000584995 SLC46A1-006 protein_coding Homo_sapiens 0 824
ENST00000585482 SARM1-001 protein_coding Homo_sapiens 0 206
ENST00000612814 SLC46A1-001 protein_coding Homo_sapiens 0 1363
ENST00000618626 SLC46A1-002 protein_coding Homo_sapiens 0 1013
ENST00000619923 SLC46A1-012 retained_intron Homo_sapiens 0 206

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