C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 35, member B1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020873 Slc35b1 10090 + 11:95384692-95391776 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000021243 Slc35b1-001 95384692-95391776 protein_coding
  ENSMUST00000131193 Slc35b1-002 95384891-95391776 nonsense_mediated_decay
  ENSMUST00000141284 Slc35b1-004 95384906-95386311 retained_intron
  ENSMUST00000143090 Slc35b1-005 95389985-95390653 retained_intron
  ENSMUST00000146556 Slc35b1-003 95384757-95387890 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Gene structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021243ENSMUST00000131193
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021243 12.460±1.42 7.643±1.60 10.393±3.05 7.417±5.58 15.662±7.30 17.796±2.25 8.305±1.54 12.984±2.65 13.293±4.36 10.445±2.00 9.054±1.28 14.829±5.45 18.459±12.66 13.325±1.65
ENSMUST00000131193 18.069±5.96 30.093±4.80 14.866±0.81 15.654±3.50 19.108±6.78 21.633±5.29 9.081±1.41 12.424±2.98 16.206±8.94 23.032±4.33 13.721±1.84 27.342±11.73 18.580±3.33 4.913±1.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007QJ CIL_0007QJ_0002 VISTA 11:95039208-95641127
CIL_000877 CIL_000877_0002 VISTA 11:95055809-95658196
CIL_0009BV CIL_0009BV_0002 VISTA 11:95055825-95658170

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005783 IEA endoplasmic reticulum
GO:0008643 IEA carbohydrate transport
GO:0016021 IEA integral component of membrane
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000038213 slc35b1 solute carrier family 35, member B1 protein_coding Danio_rerio
ENSDARG00000070689 slc35b1 solute carrier family 35, member B1 protein_coding Danio_rerio
ENSG00000121073 SLC35B1 solute carrier family 35, member B1 protein_coding Homo_sapiens

Loading