C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 35, member B1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000121073 SLC35B1 9606 - 17:49700943-49709014 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000240333 SLC35B1-001 49700943-49708199 protein_coding
  ENST00000435059 SLC35B1-004 49703932-49707920 retained_intron
  ENST00000502268 SLC35B1-016 49703233-49707067 nonsense_mediated_decay
  ENST00000502406 SLC35B1-003 49701321-49708166 retained_intron
  ENST00000503334 SLC35B1-009 49702892-49708163 protein_coding
  ENST00000504260 SLC35B1-005 49701287-49707771 retained_intron
  ENST00000505765 SLC35B1-015 49705885-49707260 retained_intron
  ENST00000507477 SLC35B1-006 49701328-49703990 retained_intron
  ENST00000507773 SLC35B1-002 49701339-49708090 nonsense_mediated_decay
  ENST00000508520 SLC35B1-008 49703197-49708169 protein_coding
  ENST00000508607 SLC35B1-014 49706076-49707920 retained_intron
  ENST00000508749 SLC35B1-019 49701328-49703138 retained_intron
  ENST00000508926 SLC35B1-017 49705072-49706355 retained_intron
  ENST00000509781 SLC35B1-011 49705868-49707964 retained_intron
  ENST00000511657 SLC35B1-007 49705222-49709014 protein_coding
  ENST00000511763 SLC35B1-013 49704152-49707940 protein_coding
  ENST00000513508 SLC35B1-018 49703838-49705365 retained_intron
  ENST00000514907 SLC35B1-010 49704100-49708157 protein_coding
  ENST00000515850 SLC35B1-012 49704111-49707949 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000240333ENST00000435059ENST00000502268ENST00000503334ENST00000504260ENST00000507477ENST00000507773ENST00000508607ENST00000508749ENST00000508926ENST00000509781ENST00000511763ENST00000514907
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000240333 N/A N/A 0.779±0.00 2.649±0.00 N/A 0.802±0.00 2.667±0.60 1.203±0.00 5.226±4.68 1.245±0.78 1.491±0.00 5.772±0.54 4.610±1.04 2.813±0.00
ENST00000435059 N/A N/A N/A N/A N/A N/A N/A 2.569±0.00 N/A N/A N/A 15.957±10.89 12.177±0.00 12.028±0.00
ENST00000502268 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.881±0.00 N/A
ENST00000503334 4.371±0.00 8.062±0.00 N/A N/A 5.598±0.00 N/A N/A 10.475±0.00 N/A 3.919±0.00 N/A N/A N/A 4.603±0.00
ENST00000504260 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.419±0.00 N/A N/A N/A N/A
ENST00000507477 N/A N/A N/A N/A 0.368±0.00 N/A N/A N/A N/A 0.276±0.00 N/A N/A N/A N/A
ENST00000507773 6.504±0.00 12.349±0.00 N/A 8.292±3.17 3.548±1.93 3.557±0.02 6.354±4.96 10.594±9.52 10.677±7.44 5.372±3.45 13.019±5.99 11.410±2.97 11.121±3.61 9.453±0.00
ENST00000508607 N/A N/A 4.807±0.00 N/A N/A 2.217±0.00 N/A N/A N/A N/A N/A 37.163±0.00 17.936±0.00 17.025±0.00
ENST00000508749 N/A N/A N/A N/A N/A N/A N/A 4.219±0.00 N/A N/A N/A N/A N/A N/A
ENST00000508926 N/A N/A N/A N/A 3.872±0.00 N/A N/A N/A N/A 3.144±0.00 N/A 13.793±0.00 N/A N/A
ENST00000509781 N/A N/A N/A N/A 1.111±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511763 N/A N/A N/A N/A N/A N/A 4.033±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000514907 N/A N/A N/A 4.477±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000877 CIL_000877_0001 VISTA 17:49438854-50041456
CIL_0009BV CIL_0009BV_0001 VISTA 17:49438877-50041441
CIL_0007QJ CIL_0007QJ_0001 VISTA 17:49459872-50061823
CIL_0004N2 CIL_0004N2_0002 CGP 17:49598884-49709014
CIL_0004N1 CIL_0004N1_0002 CGP 17:49700943-49789180

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005459 TAS UDP-galactose transmembrane transporter activity
GO:0005783 IEA endoplasmic reticulum
GO:0006810 TAS transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0043231 TAS intracellular membrane-bounded organelle
GO:0055085 IEA transmembrane transport
GO:0072334 TAS UDP-galactose transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000038213 slc35b1 solute carrier family 35, member B1 protein_coding Danio_rerio
ENSDARG00000070689 slc35b1 solute carrier family 35, member B1 protein_coding Danio_rerio
ENSMUSG00000020873 Slc35b1 solute carrier family 35, member B1 protein_coding Mus_musculus

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