C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002L8_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000126351-ENSG00000126368 CGP 9606 17:40058290-40100725
GeneTranscriptPositionBiotype
ENSG00000008838 (MED24)
mediator complex subunit 24 		ENST00000356271 (MED24-016) 40019098-40054407 protein_coding
ENST00000394126 (MED24-003) 40019097-40054092 protein_coding
ENST00000394127 (MED24-002) 40019108-40054405 protein_coding
ENST00000394128 (MED24-006) 40019102-40054405 protein_coding
ENST00000422942 (MED24-009) 40019503-40023160 protein_coding
ENST00000428757 (MED24-018) 40032716-40053873 protein_coding
ENST00000470126 (MED24-008) 40019632-40021414 processed_transcript
ENST00000479829 (MED24-005) 40033707-40054375 processed_transcript
ENST00000491466 (MED24-010) 40019145-40022442 nonsense_mediated_decay
ENST00000492176 (MED24-011) 40022412-40023651 retained_intron
ENST00000495586 (MED24-012) 40026306-40027149 retained_intron
ENST00000501516 (MED24-004) 40019529-40053608 protein_coding
ENST00000535071 (MED24-014) 40022394-40054408 protein_coding
ENST00000535508 (MED24-017) 40019173-40054405 nonsense_mediated_decay
ENST00000537674 (MED24-024) 40035262-40054413 protein_coding
ENST00000543759 (MED24-025) 40035143-40054413 protein_coding
ENST00000577488 (MED24-030) 40032673-40033675 retained_intron
ENST00000578161 (MED24-026) 40035322-40054416 protein_coding
ENST00000578901 (MED24-019) 40027015-40053377 nonsense_mediated_decay
ENST00000579364 (MED24-036) 40019449-40020610 retained_intron
ENST00000580008 (MED24-020) 40033056-40053312 nonsense_mediated_decay
ENST00000580302 (MED24-023) 40053348-40054742 protein_coding
ENST00000580517 (MED24-027) 40035296-40054416 protein_coding
ENST00000580720 (MED24-035) 40023142-40026450 retained_intron
ENST00000580885 (MED24-013) 40023289-40054408 protein_coding
ENST00000580921 (MED24-034) 40026178-40027523 retained_intron
ENST00000581054 (MED24-028) 40035901-40054408 retained_intron
ENST00000581058 (MED24-033) 40023365-40027946 nonsense_mediated_decay
ENST00000582023 (MED24-022) 40035285-40056690 protein_coding
ENST00000584077 (MED24-031) 40031168-40032433 retained_intron
ENST00000584782 (MED24-032) 40026303-40028059 retained_intron
ENST00000585249 (MED24-029) 40032671-40033646 retained_intron
ENST00000585306 (MED24-021) 40035198-40061215 protein_coding
ENST00000614384 (MED24-201) 40019129-40053615 protein_coding
ENSG00000126351 (THRA)
thyroid hormone receptor, alpha 		ENST00000264637 (THRA-001) 40062810-40093867 protein_coding
ENST00000394121 (THRA-003) 40062193-40093613 protein_coding
ENST00000450525 (THRA-002) 40062899-40092627 protein_coding
ENST00000546243 (THRA-006) 40068903-40089730 protein_coding
ENST00000577288 (THRA-007) 40058290-40076912 protein_coding
ENST00000577486 (THRA-010) 40072091-40077558 protein_coding
ENST00000577637 (THRA-011) 40084434-40087001 retained_intron
ENST00000578218 (THRA-009) 40062193-40083866 protein_coding
ENST00000584985 (THRA-005) 40062810-40093867 protein_coding
ENST00000585047 (THRA-008) 40061904-40077604 protein_coding
ENSG00000126368 (NR1D1)
nuclear receptor subfamily 1, group D, member 1 		ENST00000246672 (NR1D1-001) 40092787-40100725 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_0002L8_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000058756-ENSMUSG00000020889 CGP 10090 11:98740638-98775333
GeneTranscriptPositionBiotype
ENSMUSG00000020889 (Nr1d1)
nuclear receptor subfamily 1, group D, member 1 		ENSMUST00000064941 (Nr1d1-001) 98767932-98775333 protein_coding
ENSMUST00000139220 (Nr1d1-002) 98769347-98770426 processed_transcript
ENSMUSG00000058756 (Thra)
thyroid hormone receptor alpha 		ENSMUST00000064187 (Thra-001) 98741811-98769006 protein_coding
ENSMUST00000103139 (Thra-003) 98741873-98765111 protein_coding
ENSMUST00000124072 (Thra-004) 98753586-98768403 protein_coding
ENSMUST00000124130 (Thra-008) 98740904-98753442 processed_transcript
ENSMUST00000142944 (Thra-005) 98740638-98753379 processed_transcript
ENSMUST00000150693 (Thra-006) 98744233-98753777 processed_transcript
ENSMUST00000152195 (Thra-002) 98741811-98757695 processed_transcript
ENSMUST00000153043 (Thra-007) 98742158-98756995 protein_coding
ENSMUST00000153468 (Thra-009) 98740801-98753638 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002L8_0001ENSG00000008838ENST00000356271ENST00000394126ENST00000394127ENST00000394128ENST00000422942ENST00000428757ENST00000470126ENST00000479829ENST00000491466ENST00000492176ENST00000495586ENST00000501516ENST00000535071ENST00000535508ENST00000537674ENST00000543759ENST00000577488ENST00000578161ENST00000578901ENST00000579364ENST00000580008ENST00000580302ENST00000580517ENST00000580720ENST00000580885ENST00000580921ENST00000581054ENST00000581058ENST00000582023ENST00000584077ENST00000584782ENST00000585249ENST00000585306ENST00000614384ENSG00000126351ENST00000264637ENST00000394121ENST00000450525ENST00000546243ENST00000577288ENST00000577486ENST00000577637ENST00000578218ENST00000584985ENST00000585047ENSG00000126368ENST00000246672CIL_0002L8_0002ENSMUSG00000020889ENSMUST00000064941ENSMUST00000139220ENSMUSG00000058756ENSMUST00000064187ENSMUST00000103139ENSMUST00000124072ENSMUST00000124130ENSMUST00000142944ENSMUST00000150693ENSMUST00000152195ENSMUST00000153043ENSMUST00000153468
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002L8_0001ENSG00000008838ENST00000356271ENST00000394127ENST00000394128ENST00000422942ENST00000428757ENST00000491466ENST00000492176ENST00000501516ENST00000535071ENST00000535508ENST00000577488ENST00000578901ENST00000580885ENSG00000126351ENST00000264637ENST00000394121ENST00000450525ENST00000546243ENST00000577486ENST00000584985ENSG00000126368ENST00000246672CIL_0002L8_0002ENSMUSG00000020889ENSMUST00000064941ENSMUSG00000058756ENSMUST00000064187ENSMUST00000103139ENSMUST00000124072ENSMUST00000152195ENSMUST00000153043
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000008838 ENST00000356271 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.657±0.00 N/A N/A N/A
ENST00000394126 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000394127 N/A 3.233±0.00 N/A 2.382±1.39 4.371±0.00 N/A 3.171±2.72 N/A N/A N/A 3.621±0.00 6.257±0.00 6.201±0.00 5.265±0.37
ENST00000394128 3.256±0.00 N/A N/A N/A N/A 1.430±0.00 N/A N/A 2.223±0.00 N/A 7.625±0.00 12.652±5.70 12.656±0.50 8.269±0.00
ENST00000422942 14.883±0.00 14.499±0.00 N/A N/A 14.091±0.00 N/A N/A N/A N/A 32.410±0.00 N/A 38.749±0.00 24.336±0.00 26.576±4.57
ENST00000428757 N/A N/A N/A N/A N/A 2.941±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470126 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479829 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491466 N/A N/A N/A N/A N/A 6.385±0.00 N/A N/A N/A 35.211±0.00 N/A 40.426±0.00 N/A N/A
ENST00000492176 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.140±0.00 7.951±0.00 N/A N/A N/A
ENST00000495586 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000501516 N/A N/A 0.494±0.00 2.550±1.75 N/A N/A N/A N/A N/A 0.427±0.00 N/A 1.271±0.00 N/A 5.603±0.00
ENST00000535071 N/A N/A N/A 1.492±0.00 1.825±0.00 N/A N/A 1.584±0.00 N/A 0.739±0.00 2.148±0.00 7.284±3.50 7.362±0.00 12.081±0.00
ENST00000535508 5.718±0.00 6.332±0.00 0.679±0.00 7.067±0.00 3.783±3.06 2.632±0.00 4.464±3.69 11.950±0.00 2.491±0.00 6.963±0.00 10.494±0.00 N/A 3.639±0.00 7.314±0.00
ENST00000537674 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000543759 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000577488 N/A N/A N/A 5.276±0.00 6.043±0.00 N/A 3.749±0.00 N/A N/A 3.422±0.00 18.050±0.00 N/A N/A N/A
ENST00000578161 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578901 N/A N/A N/A N/A N/A N/A 1.446±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000579364 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000580008 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000580302 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000580517 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000580720 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000580885 N/A N/A N/A N/A N/A N/A N/A N/A 0.879±0.00 N/A N/A N/A N/A N/A
ENST00000580921 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000581054 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000581058 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000582023 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584077 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584782 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585249 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585306 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000614384 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000126351 ENST00000264637 9.080±0.00 4.490±0.00 1.183±0.00 32.071±26.92 10.735±0.00 27.027±0.00 N/A 6.672±0.00 1.359±0.42 N/A N/A 35.289±1.42 7.169±0.00 18.131±0.00
ENST00000394121 N/A N/A 1.089±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000450525 9.402±0.00 3.791±0.00 1.218±0.00 7.255±3.90 12.836±0.00 15.524±0.00 5.223±4.30 3.376±3.07 1.594±0.06 3.531±3.15 8.412±7.26 7.725±5.09 5.544±0.79 5.030±2.59
ENST00000546243 N/A N/A N/A N/A N/A 1.087±0.00 1.040±0.00 2.036±0.00 N/A N/A N/A N/A N/A N/A
ENST00000577288 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000577486 N/A N/A N/A N/A 5.032±0.00 N/A N/A 2.159±0.00 N/A N/A N/A N/A N/A N/A
ENST00000577637 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578218 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584985 N/A 4.559±0.00 N/A 27.154±0.00 5.129±3.44 8.318±5.69 5.676±4.16 16.018±0.00 N/A 9.315±0.00 N/A 4.365±0.00 5.228±0.00 12.761±1.15
ENST00000585047 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000126368 ENST00000246672 41.456±0.00 19.015±0.00 N/A 44.240±0.00 21.683±0.00 19.771±18.97 8.992±0.00 3.783±2.55 1.152±0.06 18.062±16.87 32.105±29.21 23.992±9.62 8.098±0.94 19.063±12.52
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020889 ENSMUST00000064941 49.815±34.92 165.014±27.33 62.107±7.45 43.858±0.00 49.597±16.74 36.152±4.43 55.080±12.88 44.568±6.62 17.483±7.02 77.572±34.23 27.576±18.35 30.869±8.85 0.986±0.49 8.564±2.70
ENSMUST00000139220 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000058756 ENSMUST00000064187 43.671±1.88 53.175±9.33 31.403±2.25 184.638±27.30 47.251±4.62 36.750±2.72 30.815±2.43 38.152±3.80 6.875±1.34 63.587±9.25 18.154±3.25 48.048±18.71 5.501±3.71 4.633±0.60
ENSMUST00000103139 N/A N/A N/A N/A N/A 14.216±0.00 N/A N/A 3.072±1.10 N/A 10.069±1.48 17.767±0.85 N/A N/A
ENSMUST00000124072 N/A N/A N/A 103.134±32.33 N/A N/A N/A N/A 6.240±0.72 N/A N/A 26.914±0.00 4.003±0.00 N/A
ENSMUST00000124130 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142944 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150693 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152195 N/A 68.154±2.98 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153043 N/A N/A N/A 342.474±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.860±0.00
ENSMUST00000153468 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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