C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002GG_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000126368-ENSG00000188895 CGP 9606 17:40092787-40136916
GeneTranscriptPositionBiotype
ENSG00000126351 (THRA)
thyroid hormone receptor, alpha 		ENST00000264637 (THRA-001) 40062810-40093867 protein_coding
ENST00000394121 (THRA-003) 40062193-40093613 protein_coding
ENST00000450525 (THRA-002) 40062899-40092627 protein_coding
ENST00000546243 (THRA-006) 40068903-40089730 protein_coding
ENST00000577288 (THRA-007) 40058290-40076912 protein_coding
ENST00000577486 (THRA-010) 40072091-40077558 protein_coding
ENST00000577637 (THRA-011) 40084434-40087001 retained_intron
ENST00000578218 (THRA-009) 40062193-40083866 protein_coding
ENST00000584985 (THRA-005) 40062810-40093867 protein_coding
ENST00000585047 (THRA-008) 40061904-40077604 protein_coding
ENSG00000126368 (NR1D1)
nuclear receptor subfamily 1, group D, member 1 		ENST00000246672 (NR1D1-001) 40092787-40100725 protein_coding
ENSG00000188895 (MSL1)
male-specific lethal 1 homolog (Drosophila) 		ENST00000339569 (MSL1-006) 40131001-40136787 retained_intron
ENST00000398532 (MSL1-003) 40122298-40136916 protein_coding
ENST00000577454 (MSL1-004) 40122573-40130293 protein_coding
ENST00000578648 (MSL1-005) 40122584-40134810 protein_coding
ENST00000578826 (MSL1-009) 40123097-40126860 retained_intron
ENST00000579565 (MSL1-002) 40122614-40134450 protein_coding
ENST00000580086 (MSL1-007) 40131991-40136118 retained_intron
ENST00000581246 (MSL1-012) 40130930-40133095 retained_intron
ENST00000582884 (MSL1-011) 40126393-40132042 nonsense_mediated_decay
ENST00000582920 (MSL1-010) 40124577-40129260 protein_coding
ENST00000583127 (MSL1-013) 40131780-40133886 retained_intron
ENSG00000279199 (RP11-749I16.3)
 ENST00000623793 (RP11-749I16.3-001) 40113215-40115442 TEC

Homo sapiens Ensembl (GRCh38)

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CIL_0002GG_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000020889-ENSMUSG00000052915 CGP 10090 11:98767932-98807859
GeneTranscriptPositionBiotype
ENSMUSG00000020889 (Nr1d1)
nuclear receptor subfamily 1, group D, member 1 		ENSMUST00000064941 (Nr1d1-001) 98767932-98775333 protein_coding
ENSMUST00000139220 (Nr1d1-002) 98769347-98770426 processed_transcript
ENSMUSG00000052915 (Msl1)
male-specific lethal 1 homolog (Drosophila) 		ENSMUST00000037915 (Msl1-001) 98795516-98807859 protein_coding
ENSMUST00000037930 (Msl1-003) 98798654-98805607 protein_coding
ENSMUST00000107485 (Msl1-004) 98795791-98801052 protein_coding
ENSMUST00000107487 (Msl1-002) 98795800-98806434 protein_coding
ENSMUST00000126969 (Msl1-005) 98800165-98804119 protein_coding
ENSMUST00000141016 (Msl1-006) 98804271-98805779 processed_transcript
ENSMUSG00000058756 (Thra)
thyroid hormone receptor alpha 		ENSMUST00000064187 (Thra-001) 98741811-98769006 protein_coding
ENSMUST00000103139 (Thra-003) 98741873-98765111 protein_coding
ENSMUST00000124072 (Thra-004) 98753586-98768403 protein_coding
ENSMUST00000124130 (Thra-008) 98740904-98753442 processed_transcript
ENSMUST00000142944 (Thra-005) 98740638-98753379 processed_transcript
ENSMUST00000150693 (Thra-006) 98744233-98753777 processed_transcript
ENSMUST00000152195 (Thra-002) 98741811-98757695 processed_transcript
ENSMUST00000153043 (Thra-007) 98742158-98756995 protein_coding
ENSMUST00000153468 (Thra-009) 98740801-98753638 processed_transcript
ENSMUSG00000078676 (Casc3)
cancer susceptibility candidate 3 		ENSMUST00000017384 (Casc3-001) 98804905-98833814 protein_coding
ENSMUST00000144220 (Casc3-002) 98810150-98810928 processed_transcript
ENSMUST00000147065 (Casc3-003) 98810161-98822537 processed_transcript
ENSMUST00000169695 (Casc3-201) 98809808-98833806 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002GG_0001ENSG00000126351ENST00000264637ENST00000394121ENST00000450525ENST00000546243ENST00000577288ENST00000577486ENST00000577637ENST00000578218ENST00000584985ENST00000585047ENSG00000126368ENST00000246672ENSG00000188895ENST00000339569ENST00000398532ENST00000577454ENST00000578648ENST00000578826ENST00000579565ENST00000580086ENST00000581246ENST00000582884ENST00000582920ENST00000583127ENSG00000279199ENST00000623793CIL_0002GG_0002ENSMUSG00000020889ENSMUST00000064941ENSMUST00000139220ENSMUSG00000052915ENSMUST00000037915ENSMUST00000037930ENSMUST00000107485ENSMUST00000107487ENSMUST00000126969ENSMUST00000141016ENSMUSG00000058756ENSMUST00000064187ENSMUST00000103139ENSMUST00000124072ENSMUST00000124130ENSMUST00000142944ENSMUST00000150693ENSMUST00000152195ENSMUST00000153043ENSMUST00000153468ENSMUSG00000078676ENSMUST00000017384ENSMUST00000144220ENSMUST00000147065ENSMUST00000169695
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002GG_0001ENSG00000126351ENST00000264637ENST00000394121ENST00000450525ENST00000546243ENST00000577486ENST00000584985ENSG00000126368ENST00000246672ENSG00000188895ENST00000339569ENST00000398532ENST00000577454ENST00000578648ENST00000578826ENST00000579565ENSG00000279199ENST00000623793CIL_0002GG_0002ENSMUSG00000020889ENSMUST00000064941ENSMUSG00000052915ENSMUST00000037915ENSMUST00000037930ENSMUST00000107485ENSMUST00000107487ENSMUSG00000058756ENSMUST00000064187ENSMUST00000103139ENSMUST00000124072ENSMUST00000152195ENSMUST00000153043ENSMUSG00000078676ENSMUST00000017384ENSMUST00000169695
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000126351 ENST00000264637 9.080±0.00 4.490±0.00 1.183±0.00 32.071±26.92 10.735±0.00 27.027±0.00 N/A 6.672±0.00 1.359±0.42 N/A N/A 35.289±1.42 7.169±0.00 18.131±0.00
ENST00000394121 N/A N/A 1.089±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000450525 9.402±0.00 3.791±0.00 1.218±0.00 7.255±3.90 12.836±0.00 15.524±0.00 5.223±4.30 3.376±3.07 1.594±0.06 3.531±3.15 8.412±7.26 7.725±5.09 5.544±0.79 5.030±2.59
ENST00000546243 N/A N/A N/A N/A N/A 1.087±0.00 1.040±0.00 2.036±0.00 N/A N/A N/A N/A N/A N/A
ENST00000577288 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000577486 N/A N/A N/A N/A 5.032±0.00 N/A N/A 2.159±0.00 N/A N/A N/A N/A N/A N/A
ENST00000577637 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578218 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584985 N/A 4.559±0.00 N/A 27.154±0.00 5.129±3.44 8.318±5.69 5.676±4.16 16.018±0.00 N/A 9.315±0.00 N/A 4.365±0.00 5.228±0.00 12.761±1.15
ENST00000585047 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000126368 ENST00000246672 41.456±0.00 19.015±0.00 N/A 44.240±0.00 21.683±0.00 19.771±18.97 8.992±0.00 3.783±2.55 1.152±0.06 18.062±16.87 32.105±29.21 23.992±9.62 8.098±0.94 19.063±12.52
ENSG00000188895 ENST00000339569 3.439±0.00 2.532±0.00 1.083±0.00 3.385±0.00 1.422±0.00 N/A N/A N/A N/A 2.467±0.00 N/A 2.800±0.01 N/A N/A
ENST00000398532 5.135±0.00 2.541±0.00 N/A 8.314±0.00 4.417±1.76 7.657±5.79 2.426±1.39 3.735±1.41 2.591±0.00 8.521±7.08 5.137±4.10 8.515±4.99 5.406±0.93 19.077±1.67
ENST00000577454 11.526±0.00 16.375±0.00 1.006±0.00 9.993±5.02 7.097±5.08 6.457±2.92 5.082±4.33 7.471±6.46 4.578±3.38 9.491±6.69 5.335±3.36 20.642±4.16 15.798±1.61 22.479±7.42
ENST00000578648 N/A N/A 1.413±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578826 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 28.631±0.00 17.621±0.00 33.451±0.00
ENST00000579565 N/A N/A 1.281±0.00 5.542±0.00 N/A 2.677±0.00 1.054±0.00 1.810±0.00 2.267±0.00 1.702±0.00 N/A 2.913±0.00 N/A 20.815±0.00
ENST00000580086 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000581246 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000582884 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000582920 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583127 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000279199 ENST00000623793 0.300±0.00 0.490±0.00 N/A 0.200±0.00 0.204±0.00 0.182±0.02 0.044±0.00 0.200±0.03 0.065±0.02 0.195±0.00 0.134±0.00 0.110±0.02 0.036±0.00 0.476±0.04
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020889 ENSMUST00000064941 49.815±34.92 165.014±27.33 62.107±7.45 43.858±0.00 49.597±16.74 36.152±4.43 55.080±12.88 44.568±6.62 17.483±7.02 77.572±34.23 27.576±18.35 30.869±8.85 0.986±0.49 8.564±2.70
ENSMUST00000139220 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000052915 ENSMUST00000037915 8.635±2.93 11.178±2.93 12.309±0.98 19.283±4.13 9.366±3.79 5.789±1.71 5.143±0.13 6.242±0.21 6.285±2.05 12.966±2.02 7.941±0.53 12.711±4.59 5.906±0.84 23.146±6.35
ENSMUST00000037930 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 75.816±0.00
ENSMUST00000107485 12.931±3.70 16.602±2.60 16.678±0.87 23.912±8.13 15.583±5.24 11.920±1.91 8.189±0.53 7.551±1.33 7.045±2.97 18.279±2.42 10.655±0.89 17.496±5.50 20.470±9.38 24.200±2.21
ENSMUST00000107487 N/A N/A N/A 20.995±0.00 N/A N/A N/A N/A N/A N/A N/A 21.702±0.00 N/A 31.061±0.00
ENSMUST00000126969 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141016 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000058756 ENSMUST00000064187 43.671±1.88 53.175±9.33 31.403±2.25 184.638±27.30 47.251±4.62 36.750±2.72 30.815±2.43 38.152±3.80 6.875±1.34 63.587±9.25 18.154±3.25 48.048±18.71 5.501±3.71 4.633±0.60
ENSMUST00000103139 N/A N/A N/A N/A N/A 14.216±0.00 N/A N/A 3.072±1.10 N/A 10.069±1.48 17.767±0.85 N/A N/A
ENSMUST00000124072 N/A N/A N/A 103.134±32.33 N/A N/A N/A N/A 6.240±0.72 N/A N/A 26.914±0.00 4.003±0.00 N/A
ENSMUST00000124130 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142944 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150693 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152195 N/A 68.154±2.98 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153043 N/A N/A N/A 342.474±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.860±0.00
ENSMUST00000153468 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000078676 ENSMUST00000017384 N/A N/A N/A N/A N/A N/A N/A N/A 4.405±0.00 N/A N/A N/A N/A N/A
ENSMUST00000144220 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147065 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000169695 13.806±3.32 21.807±3.51 12.544±1.55 22.517±8.77 13.480±6.49 15.770±2.62 6.183±1.98 9.966±1.08 8.911±3.27 19.286±0.98 6.720±0.50 14.570±4.39 10.095±1.58 13.914±0.40

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