C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: LSM12 homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020922 Lsm12 10090 - 11:102162497-102185296 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000021297 Lsm12-001 102162497-102185296 protein_coding
  ENSMUST00000107156 Lsm12-005 102162497-102185229 protein_coding
  ENSMUST00000137930 Lsm12-003 102164116-102185257 processed_transcript
  ENSMUST00000140429 Lsm12-004 102163952-102182881 processed_transcript
  ENSMUST00000153276 Lsm12-002 102167141-102185261 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021297ENSMUST00000107156
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021297 22.843±1.86 24.573±4.41 9.282±4.23 9.341±4.81 13.707±5.15 11.707±1.47 10.687±0.72 12.714±5.00 6.768±2.18 6.583±2.47 11.642±1.38 7.112±4.08 15.588±4.49 19.364±8.39
ENSMUST00000107156 6.870±1.45 N/A N/A 2.356±0.00 9.130±8.01 4.746±0.00 1.419±0.14 2.579±0.00 N/A 2.042±0.00 N/A 5.225±2.70 3.402±1.73 0.869±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000997 CIL_000997_0002 VISTA 11:101567301-102168287
CIL_0009B6 CIL_0009B6_0002 VISTA 11:102063033-102664797
CIL_00059L CIL_00059L_0002 CGP 11:102152546-102185296
CIL_0007BO CIL_0007BO_0002 CGP 11:102162497-102194081

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000028848 lsm12a LSM12 homolog a (S. cerevisiae) protein_coding Danio_rerio
ENSDARG00000045940 lsm12b LSM12 homolog b (S. cerevisiae) protein_coding Danio_rerio
ENSG00000161654 LSM12 LSM12 homolog (S. cerevisiae) protein_coding Homo_sapiens

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