C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LSM12 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021297 Lsm12-001 ENSMUSG00000020922 10090 - 11:102162497-102185296 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021297
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021297 22.843±1.86 24.573±4.41 9.282±4.23 9.341±4.81 13.707±5.15 11.707±1.47 10.687±0.72 12.714±5.00 6.768±2.18 6.583±2.47 11.642±1.38 7.112±4.08 15.588±4.49 19.364±8.39

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000997 CIL_000997_0002 VISTA 11:101567301-102168287
CIL_0009B6 CIL_0009B6_0002 VISTA 11:102063033-102664797
CIL_00059L CIL_00059L_0002 CGP 11:102152546-102185296
CIL_0007BO CIL_0007BO_0002 CGP 11:102162497-102194081

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000293406 LSM12-201 protein_coding Homo_sapiens 0 2355
ENST00000411836 LSM12P1-001 processed_pseudogene Homo_sapiens 0 992
ENST00000585388 LSM12-002 protein_coding Homo_sapiens 0 953
ENST00000590563 LSM12-003 retained_intron Homo_sapiens 0 688
ENST00000591247 LSM12-001 protein_coding Homo_sapiens 0 2355

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