C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LSM12 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107156 Lsm12-005 ENSMUSG00000020922 10090 - 11:102162497-102185229 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLungOvaryPlacentaTestisENSMUST00000107156
Transcript ID Adipose Brain Breast Colon Heart Kidney Lung Ovary Placenta Testis
ENSMUST00000107156 6.870±1.45 2.356±0.00 9.130±8.01 4.746±0.00 1.419±0.14 2.579±0.00 2.042±0.00 5.225±2.70 3.402±1.73 0.869±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000997 CIL_000997_0002 VISTA 11:101567301-102168287
CIL_0009B6 CIL_0009B6_0002 VISTA 11:102063033-102664797
CIL_00059L CIL_00059L_0002 CGP 11:102152546-102185296
CIL_0007BO CIL_0007BO_0002 CGP 11:102162497-102194081

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000293406 LSM12-201 protein_coding Homo_sapiens 0 1784
ENST00000411836 LSM12P1-001 processed_pseudogene Homo_sapiens 0 558
ENST00000585388 LSM12-002 protein_coding Homo_sapiens 0 403
ENST00000590563 LSM12-003 retained_intron Homo_sapiens 0 688
ENST00000591247 LSM12-001 protein_coding Homo_sapiens 0 1784

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