C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: glial fibrillary acidic protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020932 Gfap 10090 - 11:102887336-102900912 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000067444 Gfap-001 102887336-102897131 protein_coding
  ENSMUST00000077902 Gfap-201 102890166-102897200 protein_coding
  ENSMUST00000127909 Gfap-002 102894487-102900912 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000067444ENSMUST00000077902ENSMUST00000127909
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000067444 0.356±0.31 0.344±0.09 12.354±17.32 0.192±0.07 1.752±0.41 0.070±0.01 0.099±0.03 4.538±6.30 0.117±0.05 N/A 0.375±0.16 0.059±0.02 1.131±1.04
ENSMUST00000077902 N/A N/A 0.022±0.00 0.138±0.00 0.562±0.00 0.051±0.00 0.057±0.02 0.795±0.87 0.095±0.00 0.023±0.00 0.355±0.15 0.024±0.01 0.292±0.00
ENSMUST00000127909 0.071±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ST CIL_0007ST_0002 VISTA 11:102292756-102896210
CIL_0006UB CIL_0006UB_0002 CGP 11:102887336-102925124

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005178 IEA integrin binding
GO:0005198 IMP structural molecule activity
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005882 IDA intermediate filament
GO:0009611 IEA response to wounding
GO:0010625 IMP positive regulation of Schwann cell proliferation
GO:0010977 IGI negative regulation of neuron projection development
GO:0014002 IGI astrocyte development
GO:0016020 IDA membrane
GO:0019900 IEA kinase binding
GO:0030198 IMP extracellular matrix organization
GO:0031102 IMP neuron projection regeneration
GO:0042995 IDA cell projection
GO:0044297 IDA cell body
GO:0045103 IMP intermediate filament-based process
GO:0045109 IGI intermediate filament organization
GO:0051580 IMP regulation of neurotransmitter uptake
GO:0060020 IMP Bergmann glial cell differentiation
GO:0060252 IEA positive regulation of glial cell proliferation
GO:0060291 IMP long-term synaptic potentiation
GO:0097449 IDA astrocyte projection
GO:0097450 IDA astrocyte end-foot

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000025301 gfap glial fibrillary acidic protein protein_coding Danio_rerio
ENSG00000131095 GFAP glial fibrillary acidic protein protein_coding Homo_sapiens

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