C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: glial fibrillary acidic protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000131095 GFAP 9606 - 17:44905008-44916937 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000253408 GFAP-001 44905626-44915552 protein_coding
  ENST00000376990 GFAP-004 44911303-44915500 nonsense_mediated_decay
  ENST00000435360 GFAP-002 44909667-44915494 protein_coding
  ENST00000585543 GFAP-014 44907228-44911515 retained_intron
  ENST00000585728 GFAP-020 44913313-44915500 nonsense_mediated_decay
  ENST00000586125 GFAP-019 44908099-44910636 protein_coding
  ENST00000586127 GFAP-009 44913352-44914376 protein_coding
  ENST00000586793 GFAP-024 44910349-44915494 protein_coding
  ENST00000587997 GFAP-011 44911268-44913696 protein_coding
  ENST00000588037 GFAP-006 44913799-44915503 protein_coding
  ENST00000588316 GFAP-018 44911697-44915488 protein_coding
  ENST00000588640 GFAP-012 44908135-44912934 processed_transcript
  ENST00000588735 GFAP-008 44906974-44915500 protein_coding
  ENST00000588957 GFAP-021 44911674-44915951 protein_coding
  ENST00000589701 GFAP-017 44906885-44908222 retained_intron
  ENST00000590922 GFAP-010 44911672-44913698 retained_intron
  ENST00000591327 GFAP-007 44913406-44915500 processed_transcript
  ENST00000591719 GFAP-013 44911412-44912767 processed_transcript
  ENST00000591880 GFAP-015 44907650-44910651 protein_coding
  ENST00000592065 GFAP-025 44905008-44908114 processed_transcript
  ENST00000592320 GFAP-005 44910619-44915504 protein_coding
  ENST00000592706 GFAP-016 44906939-44909752 processed_transcript
  ENST00000593179 GFAP-023 44915461-44916937 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainENST00000253408ENST00000585728
Transcript ID Brain
ENST00000253408 433.548±315.03
ENST00000585728 257.251±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006UA CIL_0006UA_0001 CGP 17:44849943-44905390
CIL_0006UB CIL_0006UB_0001 CGP 17:44905008-44947711

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005178 IEA integrin binding
GO:0005198 IEA structural molecule activity
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005515 IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005882 IEA intermediate filament
GO:0009611 IEA response to wounding
GO:0010625 IEA positive regulation of Schwann cell proliferation
GO:0010977 IEA negative regulation of neuron projection development
GO:0014002 IEA astrocyte development
GO:0016020 IEA membrane
GO:0019900 IEA kinase binding
GO:0030198 IEA extracellular matrix organization
GO:0031102 IEA neuron projection regeneration
GO:0042995 IEA cell projection
GO:0044297 IEA cell body
GO:0045103 IEA intermediate filament-based process
GO:0045109 IEA intermediate filament organization
GO:0051580 IEA regulation of neurotransmitter uptake
GO:0060020 IEA Bergmann glial cell differentiation
GO:0060252 IEA positive regulation of glial cell proliferation
GO:0060291 IEA long-term synaptic potentiation
GO:0097449 IEA astrocyte projection
GO:0097450 IEA astrocyte end-foot

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000025301 gfap glial fibrillary acidic protein protein_coding Danio_rerio
ENSMUSG00000020932 Gfap glial fibrillary acidic protein protein_coding Mus_musculus

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