C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glial fibrillary acidic protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000077902 Gfap-201 ENSMUSG00000020932 10090 - 11:102890166-102897200 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000077902
Transcript ID Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000077902 0.022±0.00 0.138±0.00 0.562±0.00 0.051±0.00 0.057±0.02 0.795±0.87 0.095±0.00 0.023±0.00 0.355±0.15 0.024±0.01 0.292±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ST CIL_0007ST_0002 VISTA 11:102292756-102896210
CIL_0006UB CIL_0006UB_0002 CGP 11:102887336-102925124

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IMP structural molecule activity
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005882 IDA intermediate filament
GO:0010625 IMP positive regulation of Schwann cell proliferation
GO:0010977 IGI negative regulation of neuron projection development
GO:0014002 IGI astrocyte development
GO:0016020 IDA membrane
GO:0030198 IMP extracellular matrix organization
GO:0031102 IMP neuron projection regeneration
GO:0042995 IDA cell projection
GO:0044297 IDA cell body
GO:0045103 IMP intermediate filament-based process
GO:0045109 IGI intermediate filament organization
GO:0051580 IMP regulation of neurotransmitter uptake
GO:0060020 IMP Bergmann glial cell differentiation
GO:0060291 IMP long-term synaptic potentiation
GO:0097449 IDA astrocyte projection
GO:0097450 IDA astrocyte end-foot

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000253408 GFAP-001 protein_coding Homo_sapiens 0 1325
ENST00000257901 KRT85-001 protein_coding Homo_sapiens 0.0000000000007 81
ENST00000257951 KRT84-001 protein_coding Homo_sapiens 0.000000000002 79
ENST00000257974 KRT82-001 protein_coding Homo_sapiens 0.000000002 69
ENST00000293308 KRT8-002 protein_coding Homo_sapiens 2e-22 111
ENST00000293525 KRT86-201 protein_coding Homo_sapiens 0.0000000001 73
ENST00000313234 KRT80-001 protein_coding Homo_sapiens 9e-19 100
ENST00000327741 KRT81-001 protein_coding Homo_sapiens 0.0000000001 73
ENST00000376990 GFAP-004 nonsense_mediated_decay Homo_sapiens 0 477
ENST00000394815 KRT80-002 protein_coding Homo_sapiens 9e-19 100
ENST00000423955 KRT86-001 protein_coding Homo_sapiens 0.0000000001 73
ENST00000432100 KRT8P30-001 processed_pseudogene Homo_sapiens 0.00000000000005 82
ENST00000434750 KRT8P8-001 processed_pseudogene Homo_sapiens 7e-21 106
ENST00000435360 GFAP-002 protein_coding Homo_sapiens 0 1404
ENST00000451609 KRT8P37-001 processed_pseudogene Homo_sapiens 7e-16 90
ENST00000466011 KRT80-003 retained_intron Homo_sapiens 8e-19 100
ENST00000504812 KRT8P31-001 processed_pseudogene Homo_sapiens 0.00000000000003 84
ENST00000508125 KRT8P33-001 processed_pseudogene Homo_sapiens 2e-17 95
ENST00000515599 KRT8P48-001 processed_pseudogene Homo_sapiens 0.00000000006 73
ENST00000519669 KRT8P3-001 processed_pseudogene Homo_sapiens 2e-22 111
ENST00000544265 KRT85-002 protein_coding Homo_sapiens 0.0000000000004 81
ENST00000546583 KRT8-005 retained_intron Homo_sapiens 3e-22 111
ENST00000546897 KRT8-003 protein_coding Homo_sapiens 2e-22 111
ENST00000547031 KRT8-020 retained_intron Homo_sapiens 9e-23 111
ENST00000550170 KRT8-008 retained_intron Homo_sapiens 2e-22 111
ENST00000552150 KRT8-004 protein_coding Homo_sapiens 2e-22 111
ENST00000552551 KRT8-001 protein_coding Homo_sapiens 2e-22 111
ENST00000556193 KRT8P2-001 processed_pseudogene Homo_sapiens 4e-17 94
ENST00000585543 GFAP-014 retained_intron Homo_sapiens 0 303
ENST00000586793 GFAP-024 protein_coding Homo_sapiens 0 1284
ENST00000588037 GFAP-006 protein_coding Homo_sapiens 0 512
ENST00000588316 GFAP-018 protein_coding Homo_sapiens 0 556
ENST00000588640 GFAP-012 processed_transcript Homo_sapiens 0 468
ENST00000591327 GFAP-007 processed_transcript Homo_sapiens 0 477
ENST00000592320 GFAP-005 protein_coding Homo_sapiens 0 686
ENST00000615839 KRT81-201 protein_coding Homo_sapiens 0.00000000007 73

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