C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coagulation factor C homolog (Limulus polyphemus)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000085412 Coch-201 ENSMUSG00000020953 10090 + 12:51593341-51605773 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000085412
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000085412 0.994±0.72 0.494±0.17 0.332±0.01 1.722±1.25 1.080±0.33 0.267±0.06 0.092±0.01 1.602±0.17 0.053±0.03 0.084±0.03 0.161±0.09 14.058±7.02 3.802±5.66 0.110±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007KV CIL_0007KV_0003 UCNEbase 12:51002016-51608860
CIL_0003T0 CIL_0003T0_0002 CGP 12:51377580-51605773
CIL_0004EI CIL_0004EI_0002 CGP 12:51593341-51691914

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005576 IMP extracellular region
GO:0005578 IDA proteinaceous extracellular matrix
GO:0007605 IMP sensory perception of sound
GO:0008360 ISS regulation of cell shape
GO:0042742 IMP defense response to bacterium
GO:0045089 IMP positive regulation of innate immune response

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216361 COCH-006 protein_coding Homo_sapiens 0 2098
ENST00000396618 COCH-005 protein_coding Homo_sapiens 0 2100
ENST00000460581 COCH-007 protein_coding Homo_sapiens 0 2058
ENST00000468826 COCH-008 protein_coding Homo_sapiens 0 1271
ENST00000475087 COCH-003 protein_coding Homo_sapiens 0 1829
ENST00000553772 COCH-010 nonsense_mediated_decay Homo_sapiens 0 385
ENST00000555881 COCH-011 protein_coding Homo_sapiens 0 737
ENST00000556908 COCH-012 protein_coding Homo_sapiens 0 638
ENST00000557065 COCH-014 nonsense_mediated_decay Homo_sapiens 0 667

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