C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000072744 Vipas39-202 ENSMUSG00000021038 10090 - 12:87238875-87266286 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000072744
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000072744 11.194±1.36 6.711±2.80 14.467±0.35 22.427±0.56 11.679±2.55 12.331±1.59 8.161±1.09 16.045±3.63 5.000±0.58 9.143±1.17 2.569±0.53 15.075±5.02 10.998±4.53

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00043O CIL_00043O_0002 CGP 12:87238875-87273997

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005737 ISS cytoplasm
GO:0005769 IEA early endosome
GO:0005770 IEA late endosome
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006886 IEA intracellular protein transport
GO:0007283 IEA spermatogenesis
GO:0008333 IEA endosome to lysosome transport
GO:0030154 IEA cell differentiation
GO:0030897 IEA HOPS complex
GO:0031410 IEA cytoplasmic vesicle
GO:0055037 IEA recycling endosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000327028 VIPAS39-201 protein_coding Homo_sapiens 0 1434
ENST00000343765 VIPAS39-005 protein_coding Homo_sapiens 0 1818
ENST00000448935 VIPAS39-002 protein_coding Homo_sapiens 0 1434
ENST00000553691 VIPAS39-009 retained_intron Homo_sapiens 0 730
ENST00000553888 VIPAS39-001 protein_coding Homo_sapiens 0 1818
ENST00000556412 VIPAS39-004 protein_coding Homo_sapiens 0 1818
ENST00000557466 VIPAS39-007 protein_coding Homo_sapiens 3e-40 169
ENST00000557658 VIPAS39-003 protein_coding Homo_sapiens 0 1901

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