C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: zinc finger protein 36, C3H type-like 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000021127 Zfp36l1 10090 - 12:80107760-80113013 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000021552 Zfp36l1-201 80107760-80113013 protein_coding
  ENSMUST00000165114 Zfp36l1-202 80108698-80112998 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021552ENSMUST00000165114
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021552 23.196±14.20 34.569±6.89 23.180±1.05 4.280±0.82 31.758±11.77 23.614±8.09 4.734±0.83 14.301±5.26 9.496±5.15 35.279±6.05 1.948±0.60 26.008±15.31 5.126±1.87 3.583±0.65
ENSMUST00000165114 51.383±2.52 57.078±36.95 30.639±0.00 N/A 35.726±9.82 30.115±13.76 7.368±3.79 15.644±4.67 6.681±2.66 30.229±10.60 2.179±0.20 33.107±22.51 3.960±1.59 3.592±3.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001JV CIL_0001JV_0003 CGP 12:79297351-80113013
CIL_0008VV CIL_0008VV_0002 VISTA 12:79546272-80149070
CIL_0002CK CIL_0002CK_0002 CGP 12:80107760-80260371

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000288 IDA nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0001570 IMP vasculogenesis
GO:0003342 IMP proepicardium development
GO:0003677 IEA DNA binding
GO:0003729 ISO mRNA binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 ISO cytosol
GO:0006402 ISO mRNA catabolic process
GO:0006417 IMP regulation of translation
GO:0006915 IMP apoptotic process
GO:0007507 IMP heart development
GO:0008283 IMP cell proliferation
GO:0021915 IMP neural tube development
GO:0033077 IGI T cell differentiation in thymus
GO:0035264 IMP multicellular organism growth
GO:0043488 ISO regulation of mRNA stability
GO:0044822 IEA poly(A) RNA binding
GO:0046872 IEA metal ion binding
GO:0048568 IMP embryonic organ development
GO:0060710 IMP chorio-allantoic fusion
GO:0060712 IMP spongiotrophoblast layer development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016154 zfp36l1a zinc finger protein 36, C3H type-like 1a protein_coding Danio_rerio
ENSDARG00000021443 zfp36l1b zinc finger protein 36, C3H type-like 1b protein_coding Danio_rerio
ENSG00000185650 ZFP36L1 ZFP36 ring finger protein-like 1 protein_coding Homo_sapiens

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