C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001JV_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000037046-ENSDARG00000021443 CGP 7955 20:9653103-9761277
GeneTranscriptPositionBiotype
ENSDARG00000021443 (zfp36l1b)
zinc finger protein 36, C3H type-like 1b 		ENSDART00000014168 (zfp36l1b-001) 9756205-9761277 protein_coding
ENSDARG00000037046 (rad51b)
RAD51 homolog B (S. cerevisiae) 		ENSDART00000053847 (rad51b-201) 9653103-9747689 protein_coding
ENSDART00000138797 (rad51b-001) 9700222-9747690 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0001JV_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000182185-ENSG00000185650 CGP 9606 14:67819779-68796253
GeneTranscriptPositionBiotype
ENSG00000182185 (RAD51B)
RAD51 paralog B 		ENST00000390683 (RAD51B-201) 67819812-67887326 protein_coding
ENST00000460526 (RAD51B-011) 67887130-68497562 processed_transcript
ENST00000468382 (RAD51B-013) 67908305-68468250 processed_transcript
ENST00000469165 (RAD51B-010) 67887130-68497881 processed_transcript
ENST00000471583 (RAD51B-003) 67819808-68478099 protein_coding
ENST00000474051 (RAD51B-007) 67885733-67887550 retained_intron
ENST00000478014 (RAD51B-012) 67887102-68683171 processed_transcript
ENST00000479335 (RAD51B-002) 67819779-68478051 nonsense_mediated_decay
ENST00000485181 (RAD51B-006) 67822165-67865087 protein_coding
ENST00000487270 (RAD51B-004) 67819808-68595996 protein_coding
ENST00000487861 (RAD51B-001) 67819779-68611565 protein_coding
ENST00000488612 (RAD51B-005) 67819829-68730218 protein_coding
ENST00000492236 (RAD51B-008) 67886756-68411457 processed_transcript
ENST00000497460 (RAD51B-009) 67886598-68540249 processed_transcript
ENST00000553334 (RAD51B-014) 67823520-67835106 protein_coding
ENST00000553595 (RAD51B-017) 67865032-68683118 processed_transcript
ENST00000553734 (RAD51B-015) 67843433-67887150 processed_transcript
ENST00000554183 (RAD51B-020) 68387137-68497451 processed_transcript
ENST00000554244 (RAD51B-018) 67887067-68683118 processed_transcript
ENST00000554575 (RAD51B-021) 68411510-68470717 protein_coding
ENST00000555782 (RAD51B-022) 68472033-68478101 processed_transcript
ENST00000555907 (RAD51B-016) 67857892-67887212 processed_transcript
ENST00000556251 (RAD51B-023) 68545562-68594988 processed_transcript
ENST00000557045 (RAD51B-019) 68000279-68497257 processed_transcript
ENSG00000240210 (RP11-204K16.1)
 ENST00000473054 (RP11-204K16.1-001) 68338728-68339528 processed_pseudogene
ENSG00000242941 (CTD-2325P2.2)
 ENST00000493832 (CTD-2325P2.2-001) 68693090-68693583 processed_pseudogene
ENSG00000243546 (RN7SL108P)
RNA, 7SL, cytoplasmic 108, pseudogene 		ENST00000481903 (RN7SL108P-201) 68236243-68236539 misc_RNA
ENSG00000244677 (RN7SL706P)
RNA, 7SL, cytoplasmic 706, pseudogene 		ENST00000460079 (RN7SL706P-201) 68149617-68149908 misc_RNA
ENSG00000258477 (PPIAP6)
peptidylprolyl isomerase A (cyclophilin A) pseudogene 6 		ENST00000557078 (PPIAP6-001) 68421698-68422196 processed_pseudogene
ENSG00000258623 (CTD-2325P2.3)
 ENST00000556919 (CTD-2325P2.3-001) 68683411-68685565 antisense
ENSG00000258837 (CTD-2566J3.1)
 ENST00000554679 (CTD-2566J3.1-001) 68125004-68130196 antisense
ENSG00000259038 (CTD-2325P2.4)
 ENST00000556301 (CTD-2325P2.4-001) 68627166-68628445 antisense
ENSG00000274666 (CTD-2566J3.2)
 ENST00000619934 (CTD-2566J3.2-001) 68113706-68114144 unprocessed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0001JV_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000059060-ENSMUSG00000021127 CGP 10090 12:79297351-80113013
GeneTranscriptPositionBiotype
ENSMUSG00000021127 (Zfp36l1)
zinc finger protein 36, C3H type-like 1 		ENSMUST00000021552 (Zfp36l1-201) 80107760-80113013 protein_coding
ENSMUST00000165114 (Zfp36l1-202) 80108698-80112998 protein_coding
ENSMUSG00000059060 (Rad51b)
RAD51 homolog B 		ENSMUST00000079533 (Rad51b-201) 79297351-79508656 protein_coding
ENSMUST00000171210 (Rad51b-202) 79297351-79327463 protein_coding
ENSMUSG00000097417 (Gm26669)
predicted gene, 26669 		ENSMUST00000181323 (Gm26669-201) 80108034-80113000 lincRNA
ENSMUSG00000101696 (RP23-179D3.1)
predicted gene 28056 		ENSMUST00000190925 (RP23-179D3.1-001) 79963568-79963872 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001JV_0001ENSDARG00000021443ENSDART00000014168ENSDARG00000037046ENSDART00000053847ENSDART00000138797CIL_0001JV_0002ENSG00000182185ENST00000390683ENST00000460526ENST00000468382ENST00000469165ENST00000471583ENST00000474051ENST00000478014ENST00000479335ENST00000485181ENST00000487270ENST00000487861ENST00000488612ENST00000492236ENST00000497460ENST00000553334ENST00000553595ENST00000553734ENST00000554183ENST00000554244ENST00000554575ENST00000555782ENST00000555907ENST00000556251ENST00000557045ENSG00000240210ENST00000473054ENSG00000242941ENST00000493832ENSG00000243546ENST00000481903ENSG00000244677ENST00000460079ENSG00000258477ENST00000557078ENSG00000258623ENST00000556919ENSG00000258837ENST00000554679ENSG00000259038ENST00000556301ENSG00000274666ENST00000619934CIL_0001JV_0003ENSMUSG00000021127ENSMUST00000021552ENSMUST00000165114ENSMUSG00000059060ENSMUST00000079533ENSMUST00000171210ENSMUSG00000097417ENSMUST00000181323ENSMUSG00000101696ENSMUST00000190925
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001JV_0001ENSDARG00000021443ENSDART00000014168ENSDARG00000037046ENSDART00000053847ENSDART00000138797CIL_0001JV_0002ENSG00000182185ENST00000390683ENST00000460526ENST00000468382ENST00000469165ENST00000471583ENST00000474051ENST00000478014ENST00000485181ENST00000487270ENST00000487861ENST00000488612ENST00000553334ENST00000553595ENST00000554183ENST00000554575ENST00000555782ENST00000556251ENSG00000240210ENST00000473054ENSG00000242941ENST00000493832ENSG00000243546ENST00000481903ENSG00000244677ENST00000460079ENSG00000258477ENST00000557078ENSG00000258623ENST00000556919ENSG00000258837ENST00000554679ENSG00000259038ENST00000556301ENSG00000274666ENST00000619934CIL_0001JV_0003ENSMUSG00000021127ENSMUST00000021552ENSMUST00000165114ENSMUSG00000059060ENSMUST00000079533ENSMUST00000171210ENSMUSG00000097417ENSMUST00000181323ENSMUSG00000101696ENSMUST00000190925
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000021443 ENSDART00000014168 N/A N/A N/A 11.839±2.44 N/A N/A 102.071±26.41 47.860±12.60 15.984±0.00 N/A 21.962±0.00 N/A N/A N/A
ENSDARG00000037046 ENSDART00000053847 N/A N/A N/A 0.456±0.27 N/A N/A 3.309±0.52 2.834±2.58 0.046±0.00 N/A 0.386±0.00 N/A N/A N/A
ENSDART00000138797 N/A N/A N/A 2.140±0.64 N/A N/A 1.760±0.00 N/A 0.128±0.00 N/A 0.298±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000182185 ENST00000390683 N/A N/A N/A N/A N/A N/A 0.367±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000460526 N/A N/A N/A N/A N/A N/A N/A 0.369±0.00 N/A N/A N/A 1.307±0.00 0.680±0.00 N/A
ENST00000468382 N/A N/A N/A N/A N/A N/A N/A 0.188±0.00 1.683±0.00 N/A N/A 2.294±0.00 N/A N/A
ENST00000469165 N/A N/A N/A N/A 0.525±0.00 0.332±0.00 N/A 0.383±0.00 N/A 0.458±0.00 N/A N/A 0.341±0.00 0.621±0.32
ENST00000471583 N/A N/A N/A 0.224±0.00 N/A N/A 0.102±0.00 0.278±0.00 N/A 1.077±0.83 N/A 0.780±0.00 N/A 0.154±0.00
ENST00000474051 N/A N/A N/A N/A N/A N/A N/A 0.313±0.00 N/A N/A N/A N/A N/A N/A
ENST00000478014 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.885±0.00 N/A N/A N/A N/A
ENST00000479335 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485181 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.141±0.00 N/A N/A N/A
ENST00000487270 N/A 0.311±0.00 N/A 0.118±0.02 N/A N/A 0.073±0.00 0.106±0.00 0.198±0.17 N/A N/A 1.234±0.20 0.349±0.00 0.250±0.00
ENST00000487861 N/A N/A N/A 0.212±0.00 N/A 0.500±0.00 0.059±0.00 N/A N/A 0.276±0.00 N/A N/A 0.348±0.01 0.193±0.00
ENST00000488612 0.224±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.625±0.09 N/A
ENST00000492236 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497460 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553334 2.112±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.568±0.00
ENST00000553595 N/A N/A N/A N/A N/A N/A N/A N/A 0.042±0.00 N/A N/A N/A N/A N/A
ENST00000553734 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554183 N/A N/A N/A N/A N/A N/A 0.207±0.00 N/A 0.092±0.00 N/A N/A N/A 1.258±0.00 N/A
ENST00000554244 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554575 N/A N/A N/A 2.138±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555782 N/A N/A N/A N/A N/A 2.647±0.00 N/A N/A 0.098±0.00 N/A N/A 1.512±0.00 N/A 0.663±0.00
ENST00000555907 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556251 N/A N/A N/A N/A N/A N/A 0.448±0.00 N/A N/A N/A 0.462±0.00 N/A N/A N/A
ENST00000557045 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000240210 ENST00000473054 0.082±0.00 0.132±0.00 N/A 0.072±0.00 0.093±0.00 0.064±0.00 0.020±0.00 0.045±0.00 0.059±0.00 0.043±0.00 0.134±0.00 0.029±0.00 N/A 0.119±0.00
ENSG00000242941 ENST00000493832 N/A N/A 0.183±0.00 N/A N/A N/A N/A 0.131±0.00 N/A N/A N/A 0.434±0.15 N/A 0.221±0.00
ENSG00000243546 ENST00000481903 N/A 0.167±0.00 N/A N/A 0.229±0.00 N/A N/A 0.057±0.00 0.317±0.00 0.053±0.00 N/A 0.267±0.00 N/A N/A
ENSG00000244677 ENST00000460079 N/A N/A N/A N/A 1.801±0.00 N/A N/A N/A 0.729±0.00 N/A N/A N/A N/A N/A
ENSG00000258477 ENST00000557078 N/A 0.064±0.00 N/A N/A 1.124±0.00 0.030±0.00 0.028±0.00 0.159±0.00 0.389±0.00 0.030±0.00 0.055±0.00 0.127±0.00 N/A 0.058±0.00
ENSG00000258623 ENST00000556919 0.087±0.00 0.547±0.00 N/A 0.158±0.00 0.390±0.00 N/A 0.130±0.00 N/A 0.083±0.00 0.090±0.00 N/A 0.163±0.04 0.382±0.11 0.212±0.00
ENSG00000258837 ENST00000554679 N/A N/A 0.521±0.00 N/A 0.040±0.00 0.597±0.13 N/A 0.162±0.00 N/A N/A N/A 0.092±0.04 N/A 0.050±0.00
ENSG00000259038 ENST00000556301 0.231±0.00 N/A N/A 2.848±0.26 0.585±0.00 0.690±0.00 N/A 0.082±0.00 0.900±0.69 2.173±0.00 N/A 1.683±0.00 0.818±0.20 0.590±0.00
ENSG00000274666 ENST00000619934 N/A N/A 0.191±0.00 0.835±0.00 1.003±0.00 0.385±0.00 0.163±0.00 N/A N/A 0.110±0.00 N/A 0.113±0.02 0.134±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021127 ENSMUST00000021552 23.196±14.20 34.569±6.89 23.180±1.05 4.280±0.82 31.758±11.77 23.614±8.09 4.734±0.83 14.301±5.26 9.496±5.15 35.279±6.05 1.948±0.60 26.008±15.31 5.126±1.87 3.583±0.65
ENSMUST00000165114 51.383±2.52 57.078±36.95 30.639±0.00 N/A 35.726±9.82 30.115±13.76 7.368±3.79 15.644±4.67 6.681±2.66 30.229±10.60 2.179±0.20 33.107±22.51 3.960±1.59 3.592±3.10
ENSMUSG00000059060 ENSMUST00000079533 N/A N/A 0.057±0.02 0.023±0.00 0.124±0.05 0.079±0.03 0.059±0.02 N/A 0.151±0.07 0.115±0.04 0.032±0.00 0.223±0.05 0.137±0.07 0.259±0.07
ENSMUST00000171210 0.142±0.09 0.239±0.09 N/A 0.218±0.12 0.229±0.15 0.372±0.21 0.092±0.02 0.052±0.00 1.472±0.87 N/A 0.130±0.09 0.805±0.32 1.022±0.41 0.207±0.04
ENSMUSG00000097417 ENSMUST00000181323 24.936±10.50 139.773±0.00 44.058±2.42 10.366±5.12 13.160±0.00 N/A 9.928±2.57 18.230±1.86 30.993±18.77 N/A 4.611±1.23 33.791±5.41 6.991±3.71 3.927±1.43
ENSMUSG00000101696 ENSMUST00000190925 0.259±0.00 N/A 0.116±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.093±0.19 N/A 0.373±0.12

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