C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: visual system homeobox 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000021239 Vsx2 10090 + 12:84569762-84595457 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000021665 Vsx2-001 84569762-84595457 protein_coding
  ENSMUST00000169934 Vsx2-002 84569840-84595457 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastKidneyLungOvaryPlacentaTestisENSMUST00000021665ENSMUST00000169934
Transcript ID Adipose Bladder Brain Breast Kidney Lung Ovary Placenta Testis
ENSMUST00000021665 N/A 0.004±0.00 0.692±0.29 N/A N/A 0.001±0.00 0.067±0.04 0.022±0.03 0.005±0.00
ENSMUST00000169934 0.015±0.00 0.010±0.00 0.348±0.38 0.011±0.00 0.015±0.00 0.008±0.00 0.142±0.10 0.017±0.01 0.007±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000233 CIL_000233_0002 CGP 12:84451508-84595457
CIL_000232 CIL_000232_0002 CGP 12:84569762-84617466

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005622 IDA intracellular
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0008284 IMP positive regulation of cell proliferation
GO:0008285 IMP negative regulation of cell proliferation
GO:0043010 IGI camera-type eye development
GO:0043565 IEA sequence-specific DNA binding
GO:0045165 IMP cell fate commitment
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0060040 IMP retinal bipolar neuron differentiation
GO:0060042 IMP retina morphogenesis in camera-type eye

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000005574 vsx2 visual system homeobox 2 protein_coding Danio_rerio
ENSG00000119614 VSX2 visual system homeobox 2 protein_coding Homo_sapiens

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