C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_000233_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000205659-ENSG00000119614 CGP 9606 14:74084796-74262738
GeneTranscriptPositionBiotype
ENSG00000119614 (VSX2)
visual system homeobox 2
ENST00000261980 (VSX2-001) 74239472-74262738 protein_coding
ENSG00000205659 (LIN52)
lin-52 DREAM MuvB core complex component
ENST00000553404 (LIN52-002) 74084960-74200438 retained_intron
ENST00000554076 (LIN52-004) 74084963-74114295 processed_transcript
ENST00000554289 (LIN52-005) 74085505-74097860 retained_intron
ENST00000554938 (LIN52-003) 74084956-74199251 protein_coding
ENST00000555028 (LIN52-001) 74084796-74201235 protein_coding
ENSG00000239910 (RN7SL530P)
RNA, 7SL, cytoplasmic 530, pseudogene
ENST00000485097 (RN7SL530P-201) 74174456-74174753 misc_RNA
ENSG00000258513 (RP5-892G5.2)
ENST00000555526 (RP5-892G5.2-001) 74192589-74192823 transcribed_processed_pseudogene
CIL_000233_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000085793-ENSMUSG00000021239 CGP 10090 12:84451508-84595457
GeneTranscriptPositionBiotype
ENSMUSG00000021239 (Vsx2)
visual system homeobox 2
ENSMUST00000021665 (Vsx2-001) 84569762-84595457 protein_coding
ENSMUST00000169934 (Vsx2-002) 84569840-84595457 protein_coding
ENSMUSG00000085793 (Lin52)
lin-52 homolog (C. elegans)
ENSMUST00000137170 (Lin52-201) 84451508-84531533 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000233_0001ENSG00000119614ENST00000261980ENSG00000205659ENST00000553404ENST00000554076ENST00000554289ENST00000554938ENST00000555028ENSG00000239910ENST00000485097ENSG00000258513ENST00000555526CIL_000233_0002ENSMUSG00000021239ENSMUST00000021665ENSMUST00000169934ENSMUSG00000085793ENSMUST00000137170
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000233_0001ENSG00000119614ENST00000261980ENSG00000205659ENST00000553404ENST00000554076ENST00000554289ENST00000555028ENSG00000239910ENST00000485097ENSG00000258513ENST00000555526CIL_000233_0002ENSMUSG00000021239ENSMUST00000021665ENSMUST00000169934ENSMUSG00000085793ENSMUST00000137170
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000119614 ENST00000261980 0.077±0.00 0.037±0.00 N/A 0.060±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.203±0.01
ENSG00000205659 ENST00000553404 N/A 0.856±0.00 0.925±0.00 1.109±0.19 1.050±0.00 N/A N/A 2.735±0.00 0.894±0.00 N/A 0.131±0.00 0.763±0.00 N/A N/A
ENST00000554076 N/A N/A 2.587±0.00 N/A N/A N/A N/A N/A N/A 2.042±0.00 N/A N/A N/A N/A
ENST00000554289 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.978±0.00 N/A N/A N/A
ENST00000554938 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555028 3.110±0.00 0.584±0.00 0.473±0.00 0.750±0.07 1.796±1.21 1.221±0.59 1.127±0.37 2.892±0.00 1.636±0.00 1.780±0.00 0.986±0.00 2.324±1.56 2.061±0.19 5.806±2.38
ENSG00000239910 ENST00000485097 N/A 0.063±0.00 N/A 0.071±0.00 0.067±0.00 N/A N/A N/A 1.003±0.00 N/A N/A N/A N/A N/A
ENSG00000258513 ENST00000555526 0.277±0.00 N/A N/A 0.057±0.00 N/A N/A N/A 0.056±0.00 N/A N/A N/A 0.199±0.00 0.127±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021239 ENSMUST00000021665 N/A N/A 0.004±0.00 0.692±0.29 N/A N/A N/A N/A N/A 0.001±0.00 N/A 0.067±0.04 0.022±0.03 0.005±0.00
ENSMUST00000169934 0.015±0.00 N/A 0.010±0.00 0.348±0.38 0.011±0.00 N/A N/A 0.015±0.00 N/A 0.008±0.00 N/A 0.142±0.10 0.017±0.01 0.007±0.00
ENSMUSG00000085793 ENSMUST00000137170 5.259±0.85 2.983±0.32 8.221±0.60 8.358±1.88 4.217±1.27 2.519±0.35 3.487±1.27 7.638±0.56 4.452±2.54 5.955±0.47 3.799±0.80 3.567±0.63 3.176±0.83 6.879±2.33

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