C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000021496 Pcbd2 10090 + 13:55727368-55776830 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000021958 Pcbd2-201 55727368-55776828 protein_coding
  ENSMUST00000124968 Pcbd2-001 55727368-55776830 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021958ENSMUST00000124968
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021958 45.649±3.77 53.714±9.54 42.624±5.66 4.127±0.79 22.493±10.31 42.692±11.29 28.518±7.03 97.778±7.45 37.169±17.94 47.098±11.71 5.958±0.41 29.419±11.49 9.868±3.89 4.324±0.63
ENSMUST00000124968 N/A N/A 4.738±0.00 4.184±0.39 14.314±3.90 N/A N/A 52.653±37.97 13.181±4.41 19.696±0.00 6.012±0.00 16.647±9.02 11.450±2.88 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009AP CIL_0009AP_0002 VISTA 13:55516415-56118354
CIL_0005XS CIL_0005XS_0002 CGP 13:55714650-55776830
CIL_0005XV CIL_0005XV_0002 CGP 13:55727368-55808998

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004505 IDA phenylalanine 4-monooxygenase activity
GO:0005515 IPI protein binding
GO:0005634 IPI nucleus
GO:0005739 IDA mitochondrion
GO:0006729 IEA tetrahydrobiopterin biosynthetic process
GO:0008124 IEA 4-alpha-hydroxytetrahydrobiopterin dehydratase activity
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0051289 IPI protein homotetramerization
GO:0051291 IPI protein heterooligomerization
GO:0055114 IDA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000132570 PCBD2 pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2 protein_coding Homo_sapiens

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