C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005XV_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000132570-ENSG00000152705 CGP 9606 5:134904906-135011707
GeneTranscriptPositionBiotype
ENSG00000132570 (PCBD2)
pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2 		ENST00000254908 (PCBD2-001) 134904906-134961277 protein_coding
ENST00000504352 (PCBD2-005) 134905173-135007959 nonsense_mediated_decay
ENST00000510013 (PCBD2-004) 134908830-134959095 processed_transcript
ENST00000512783 (PCBD2-002) 134905120-134969660 protein_coding
ENSG00000152705 (CATSPER3)
cation channel, sperm associated 3 		ENST00000282611 (CATSPER3-001) 134967906-135011707 protein_coding
ENST00000511235 (CATSPER3-002) 134967907-134995854 processed_transcript
ENSG00000198868 (MIR4461)
microRNA 4461 		ENST00000454092 (MIR4461-001) 134928030-134928326 processed_pseudogene
ENSG00000244921 (CTB-36O1.7)
 ENST00000501056 (CTB-36O1.7-001) 134923303-134924049 processed_pseudogene
ENSG00000247627 (MTND4P12)
MT-ND4 pseudogene 12 		ENST00000498999 (MTND4P12-001) 134926660-134928036 processed_pseudogene
ENSG00000248923 (MTND5P11)
MT-ND5 pseudogene 11 		ENST00000511037 (MTND5P11-001) 134924648-134926459 processed_pseudogene
ENSG00000249119 (MTND6P4)
MT-ND6 pseudogene 4 		ENST00000506002 (MTND6P4-001) 134924123-134924644 processed_pseudogene
ENSG00000249192 (CTB-36O1.3)
 ENST00000509243 (CTB-36O1.3-001) 134928393-134928527 processed_pseudogene
ENSG00000279799 (AC006077.3)
 ENST00000623591 (AC006077.3-001) 134905235-134905691 TEC

Homo sapiens Ensembl (GRCh38)

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CIL_0005XV_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021496-ENSMUSG00000021499 CGP 10090 13:55727368-55808998
GeneTranscriptPositionBiotype
ENSMUSG00000021496 (Pcbd2)
pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2 		ENSMUST00000021958 (Pcbd2-201) 55727368-55776828 protein_coding
ENSMUST00000124968 (Pcbd2-001) 55727368-55776830 protein_coding
ENSMUSG00000021499 (Catsper3)
cation channel, sperm associated 3 		ENSMUST00000021961 (Catsper3-001) 55784568-55808967 protein_coding
ENSMUST00000109898 (Catsper3-002) 55784579-55808998 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005XV_0001ENSG00000132570ENST00000254908ENST00000504352ENST00000510013ENST00000512783ENSG00000152705ENST00000282611ENST00000511235ENSG00000198868ENST00000454092ENSG00000244921ENST00000501056ENSG00000247627ENST00000498999ENSG00000248923ENST00000511037ENSG00000249119ENST00000506002ENSG00000249192ENST00000509243ENSG00000279799ENST00000623591CIL_0005XV_0002ENSMUSG00000021496ENSMUST00000021958ENSMUST00000124968ENSMUSG00000021499ENSMUST00000021961ENSMUST00000109898
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005XV_0001ENSG00000132570ENST00000254908ENST00000510013ENST00000512783ENSG00000152705ENST00000282611ENSG00000198868ENST00000454092ENSG00000244921ENST00000501056ENSG00000247627ENST00000498999ENSG00000248923ENST00000511037ENSG00000249119ENST00000506002ENSG00000249192ENST00000509243ENSG00000279799ENST00000623591CIL_0005XV_0002ENSMUSG00000021496ENSMUST00000021958ENSMUST00000124968ENSMUSG00000021499ENSMUST00000021961ENSMUST00000109898
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000132570 ENST00000254908 1.098±0.00 1.927±0.00 N/A 0.909±0.39 1.611±0.85 0.944±0.00 5.153±0.00 2.281±1.28 1.652±0.07 1.008±0.00 4.709±0.97 1.754±0.09 1.454±0.13 N/A
ENST00000504352 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510013 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.659±0.00 N/A N/A
ENST00000512783 0.439±0.00 0.767±0.00 0.683±0.00 0.425±0.00 0.743±0.50 0.333±0.00 0.522±0.30 0.708±0.59 0.570±0.06 0.460±0.31 1.008±0.70 0.579±0.16 0.205±0.09 0.817±0.10
ENSG00000152705 ENST00000282611 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.752±0.00 N/A 21.097±4.85
ENST00000511235 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000198868 ENST00000454092 N/A N/A N/A N/A N/A 2.082±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000244921 ENST00000501056 3.771±0.00 40.430±0.00 N/A 6.390±0.00 2.346±1.67 3.657±3.54 12.443±0.00 10.326±0.00 6.322±0.00 1.162±0.75 8.723±6.82 2.167±2.04 0.946±0.00 35.599±34.38
ENSG00000247627 ENST00000498999 600.615±0.00 271.350±0.00 N/A 6.269±0.43 3.475±3.25 326.967±326.10 652.940±0.00 211.558±210.58 286.670±0.00 1.369±0.61 422.077±0.00 112.499±43.76 20.728±19.15 3.291±0.17
ENSG00000248923 ENST00000511037 0.668±0.00 3.314±0.00 N/A 1.499±0.00 1.193±0.00 0.280±0.13 1.416±0.00 2.839±0.00 0.583±0.00 0.121±0.07 1.423±0.00 4.002±1.49 0.381±0.33 1.564±0.97
ENSG00000249119 ENST00000506002 0.585±0.00 1.622±0.00 N/A 1.769±0.00 2.150±0.00 0.455±0.00 1.819±0.00 3.631±0.00 0.798±0.00 0.371±0.00 1.545±0.00 0.824±0.10 0.539±0.28 0.555±0.06
ENSG00000249192 ENST00000509243 0.281±0.00 0.675±0.00 N/A 0.421±0.00 N/A 0.258±0.00 0.953±0.00 N/A N/A 0.208±0.00 0.922±0.00 6.141±3.94 0.669±0.00 2.105±1.86
ENSG00000279799 ENST00000623591 0.219±0.00 0.776±0.00 0.405±0.00 0.091±0.00 0.590±0.00 0.155±0.00 0.076±0.00 0.521±0.00 0.074±0.00 0.884±0.00 N/A 0.888±0.09 0.515±0.06 0.651±0.01
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021496 ENSMUST00000021958 45.649±3.77 53.714±9.54 42.624±5.66 4.127±0.79 22.493±10.31 42.692±11.29 28.518±7.03 97.778±7.45 37.169±17.94 47.098±11.71 5.958±0.41 29.419±11.49 9.868±3.89 4.324±0.63
ENSMUST00000124968 N/A N/A 4.738±0.00 4.184±0.39 14.314±3.90 N/A N/A 52.653±37.97 13.181±4.41 19.696±0.00 6.012±0.00 16.647±9.02 11.450±2.88 N/A
ENSMUSG00000021499 ENSMUST00000021961 0.063±0.01 0.175±0.10 0.111±0.00 0.020±0.01 0.063±0.03 0.069±0.00 0.053±0.03 0.117±0.08 0.030±0.02 0.126±0.05 0.041±0.03 0.127±0.03 0.015±0.00 32.754±12.79
ENSMUST00000109898 0.060±0.01 0.068±0.00 0.124±0.04 0.165±0.15 0.035±0.01 N/A 0.006±0.00 0.097±0.04 0.071±0.08 N/A 0.042±0.02 0.189±0.17 0.065±0.00 9.601±0.05

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