C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cation channel, sperm associated 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000021499 Catsper3 10090 + 13:55784568-55808998 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000021961 Catsper3-001 55784568-55808967 protein_coding
  ENSMUST00000109898 Catsper3-002 55784579-55808998 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021961ENSMUST00000109898
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021961 0.063±0.01 0.175±0.10 0.111±0.00 0.020±0.01 0.063±0.03 0.069±0.00 0.053±0.03 0.117±0.08 0.030±0.02 0.126±0.05 0.041±0.03 0.127±0.03 0.015±0.00 32.754±12.79
ENSMUST00000109898 0.060±0.01 0.068±0.00 0.124±0.04 0.165±0.15 0.035±0.01 N/A 0.006±0.00 0.097±0.04 0.071±0.08 N/A 0.042±0.02 0.189±0.17 0.065±0.00 9.601±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009AP CIL_0009AP_0002 VISTA 13:55516415-56118354
CIL_0005XV CIL_0005XV_0002 CGP 13:55727368-55808998
CIL_0007JT CIL_0007JT_0005 UCNEbase 13:55750083-56024842
CIL_0005XU CIL_0005XU_0002 CGP 13:55784568-55836192

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001669 IDA acrosomal vesicle
GO:0005227 IEA calcium activated cation channel activity
GO:0005245 IBA voltage-gated calcium channel activity
GO:0005515 IPI protein binding
GO:0005783 IDA endoplasmic reticulum
GO:0006814 IMP sodium ion transport
GO:0007275 IEA multicellular organismal development
GO:0030317 IMP sperm motility
GO:0031514 IEA motile cilium
GO:0034765 IEA regulation of ion transmembrane transport
GO:0036128 IDA CatSper complex
GO:0048240 IMP sperm capacitation
GO:0070509 IBA calcium ion import
GO:0070588 IEA calcium ion transmembrane transport
GO:0086010 IBA membrane depolarization during action potential

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000152705 CATSPER3 cation channel, sperm associated 3 protein_coding Homo_sapiens

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