C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 28 (sodium-coupled nucleoside transporter), member 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000021553 Slc28a3 10090 - 13:58545399-58610877 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000022036 Slc28a3-001 58553305-58610877 protein_coding
  ENSMUST00000140760 Slc28a3-004 58545399-58558267 nonsense_mediated_decay
  ENSMUST00000148396 Slc28a3-002 58581690-58610877 nonsense_mediated_decay
  ENSMUST00000151675 Slc28a3-003 58586683-58610869 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000022036ENSMUST00000140760ENSMUST00000148396ENSMUST00000151675
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000022036 1.145±0.80 0.034±0.01 0.043±0.01 0.063±0.03 0.434±0.09 1.568±0.31 0.044±0.01 0.014±0.00 0.015±0.01 0.714±0.50 0.011±0.00 2.685±1.08 0.981±0.60 0.398±0.17
ENSMUST00000140760 N/A N/A N/A N/A N/A N/A 0.045±0.00 N/A N/A N/A N/A N/A N/A 0.809±0.13
ENSMUST00000148396 N/A N/A N/A 0.009±0.00 N/A N/A N/A N/A N/A 0.084±0.00 N/A N/A N/A 0.165±0.00
ENSMUST00000151675 0.022±0.00 N/A 0.013±0.00 0.074±0.00 N/A N/A 0.041±0.00 0.022±0.00 0.039±0.00 N/A 0.025±0.00 0.532±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006H3 CIL_0006H3_0002 CGP 13:58402597-58610877
CIL_0006HO CIL_0006HO_0002 CGP 13:58545399-59133970

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001882 IEA nucleoside binding
GO:0005887 ISS integral component of plasma membrane
GO:0006863 IDA purine nucleobase transport
GO:0015389 IDA pyrimidine- and adenine-specific:sodium symporter activity
GO:0015390 IDA purine-specific nucleoside:sodium symporter activity
GO:0015855 IDA pyrimidine nucleobase transport
GO:0015860 IDA purine nucleoside transmembrane transport
GO:0015864 IDA pyrimidine nucleoside transport
GO:0072531 IDA pyrimidine-containing compound transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000197506 SLC28A3 solute carrier family 28 (concentrative nucleoside transporter), member 3 protein_coding Homo_sapiens

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