C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006H3_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000178966-ENSG00000197506 CGP 9606 9:83980711-84340683
GeneTranscriptPositionBiotype
ENSG00000178966 (RMI1)
RecQ mediated genome instability 1 		ENST00000325875 (RMI1-002) 83980798-84004074 protein_coding
ENST00000445877 (RMI1-001) 83980711-84002233 protein_coding
ENST00000615118 (RMI1-201) 83980869-84002762 protein_coding
ENSG00000197506 (SLC28A3)
solute carrier family 28 (concentrative nucleoside transporter), member 3 		ENST00000376238 (SLC28A3-001) 84275457-84340683 protein_coding
ENST00000495823 (SLC28A3-002) 84305276-84340659 processed_transcript
ENSG00000202523 (Y_RNA)
Y RNA 		ENST00000365653 (Y_RNA.1-581) 83992932-83993033 misc_RNA
ENSG00000227463 (RP11-158D2.2)
 ENST00000423515 (RP11-158D2.2-001) 84063443-84094577 lincRNA
ENSG00000270166 (RP11-158D2.1)
 ENST00000602394 (RP11-158D2.1-001) 84078584-84078857 processed_pseudogene
CIL_0006H3_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000035367-ENSMUSG00000021553 CGP 10090 13:58402597-58610877
GeneTranscriptPositionBiotype
ENSMUSG00000021546 (Hnrnpk)
heterogeneous nuclear ribonucleoprotein K 		ENSMUST00000043269 (Hnrnpk-002) 58391239-58402502 protein_coding
ENSMUST00000116403 (Hnrnpk-001) 58391142-58403343 protein_coding
ENSMUST00000175847 (Hnrnpk-011) 58395165-58402487 protein_coding
ENSMUST00000175939 (Hnrnpk-003) 58398726-58402502 retained_intron
ENSMUST00000176207 (Hnrnpk-008) 58391337-58402649 protein_coding
ENSMUST00000176257 (Hnrnpk-020) 58391960-58394785 retained_intron
ENSMUST00000176269 (Hnrnpk-006) 58395265-58398017 retained_intron
ENSMUST00000176305 (Hnrnpk-014) 58394661-58402103 protein_coding
ENSMUST00000176359 (Hnrnpk-019) 58392122-58393975 retained_intron
ENSMUST00000176558 (Hnrnpk-007) 58397037-58402116 protein_coding
ENSMUST00000176609 (Hnrnpk-015) 58394603-58397065 retained_intron
ENSMUST00000176725 (Hnrnpk-017) 58394690-58396946 retained_intron
ENSMUST00000176797 (Hnrnpk-021) 58392233-58395198 protein_coding
ENSMUST00000176849 (Hnrnpk-012) 58394348-58402142 protein_coding
ENSMUST00000176888 (Hnrnpk-016) 58394540-58395720 retained_intron
ENSMUST00000177019 (Hnrnpk-009) 58391239-58402464 protein_coding
ENSMUST00000177051 (Hnrnpk-018) 58391950-58393868 retained_intron
ENSMUST00000177060 (Hnrnpk-010) 58395195-58402507 protein_coding
ENSMUST00000177117 (Hnrnpk-005) 58395270-58398017 protein_coding
ENSMUST00000177377 (Hnrnpk-013) 58395889-58402110 retained_intron
ENSMUST00000177497 (Hnrnpk-004) 58391239-58398055 protein_coding
ENSMUSG00000021553 (Slc28a3)
solute carrier family 28 (sodium-coupled nucleoside transporter), member 3 		ENSMUST00000022036 (Slc28a3-001) 58553305-58610877 protein_coding
ENSMUST00000140760 (Slc28a3-004) 58545399-58558267 nonsense_mediated_decay
ENSMUST00000148396 (Slc28a3-002) 58581690-58610877 nonsense_mediated_decay
ENSMUST00000151675 (Slc28a3-003) 58586683-58610869 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006H3_0001ENSG00000178966ENST00000325875ENST00000445877ENST00000615118ENSG00000197506ENST00000376238ENST00000495823ENSG00000202523ENST00000365653ENSG00000227463ENST00000423515ENSG00000270166ENST00000602394CIL_0006H3_0002ENSMUSG00000021546ENSMUST00000043269ENSMUST00000116403ENSMUST00000175847ENSMUST00000175939ENSMUST00000176207ENSMUST00000176257ENSMUST00000176269ENSMUST00000176305ENSMUST00000176359ENSMUST00000176558ENSMUST00000176609ENSMUST00000176725ENSMUST00000176797ENSMUST00000176849ENSMUST00000176888ENSMUST00000177019ENSMUST00000177051ENSMUST00000177060ENSMUST00000177117ENSMUST00000177377ENSMUST00000177497ENSMUSG00000021553ENSMUST00000022036ENSMUST00000140760ENSMUST00000148396ENSMUST00000151675
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006H3_0001ENSG00000178966ENST00000325875ENST00000445877ENST00000615118ENSG00000197506ENST00000376238ENST00000495823ENSG00000202523ENST00000365653ENSG00000227463ENST00000423515ENSG00000270166ENST00000602394CIL_0006H3_0002ENSMUSG00000021546ENSMUST00000043269ENSMUST00000116403ENSMUST00000175847ENSMUST00000175939ENSMUST00000176207ENSMUST00000176305ENSMUST00000176797ENSMUST00000176888ENSMUST00000177051ENSMUST00000177497ENSMUSG00000021553ENSMUST00000022036ENSMUST00000140760ENSMUST00000148396ENSMUST00000151675
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000178966 ENST00000325875 0.188±0.00 N/A N/A 0.058±0.00 1.030±0.00 N/A N/A 0.417±0.35 N/A 0.982±0.00 N/A 1.756±1.56 0.873±0.70 2.630±0.12
ENST00000445877 N/A N/A 1.807±0.00 0.622±0.00 0.753±0.00 1.394±0.00 N/A 0.910±0.00 1.034±0.00 0.762±0.00 0.407±0.00 2.422±0.00 N/A 2.198±0.00
ENST00000615118 N/A N/A 0.374±0.00 0.167±0.00 0.690±0.00 1.767±0.00 0.119±0.07 N/A N/A 0.816±0.00 0.447±0.00 1.220±0.85 N/A N/A
ENSG00000197506 ENST00000376238 0.055±0.00 0.043±0.00 N/A 0.056±0.00 0.660±0.00 0.091±0.07 0.044±0.01 0.060±0.00 0.064±0.02 0.143±0.06 0.010±0.00 0.653±0.42 0.187±0.15 0.173±0.04
ENST00000495823 N/A N/A N/A 0.118±0.00 0.560±0.00 N/A N/A N/A 0.282±0.00 0.367±0.00 N/A N/A 0.018±0.00 0.188±0.00
ENSG00000202523 ENST00000365653 N/A N/A N/A N/A N/A N/A N/A 0.157±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000227463 ENST00000423515 0.076±0.00 0.366±0.00 N/A 0.282±0.00 0.117±0.00 0.022±0.00 0.082±0.00 0.166±0.00 0.077±0.01 0.068±0.00 N/A 0.008±0.00 0.011±0.00 0.191±0.04
ENSG00000270166 ENST00000602394 N/A N/A N/A N/A N/A N/A N/A 0.068±0.00 N/A N/A N/A N/A N/A 0.059±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021546 ENSMUST00000043269 52.711±23.61 18.940±2.88 159.362±12.40 114.149±67.74 31.330±10.27 28.825±8.45 22.872±2.90 39.146±11.48 75.394±60.27 55.850±13.90 29.818±3.87 57.465±52.37 102.414±71.07 36.552±11.21
ENSMUST00000116403 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.231±1.23 N/A N/A N/A
ENSMUST00000175847 N/A N/A N/A 115.099±0.00 N/A N/A N/A N/A N/A N/A N/A 122.963±0.00 195.620±74.22 67.701±0.00
ENSMUST00000175939 N/A 191.668±36.00 N/A N/A 128.868±5.27 124.337±23.40 55.700±9.22 110.943±16.38 75.766±5.97 171.473±9.97 N/A 185.197±25.60 N/A N/A
ENSMUST00000176207 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 22.157±0.56
ENSMUST00000176257 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176269 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176305 N/A N/A N/A 92.368±0.00 39.336±0.00 N/A N/A N/A N/A N/A N/A 114.768±0.00 175.938±67.74 52.345±0.00
ENSMUST00000176359 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176558 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176609 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176725 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176797 81.958±35.79 104.038±5.99 N/A N/A 65.233±29.14 87.021±4.19 29.641±3.37 59.639±6.42 71.612±7.01 89.035±14.94 N/A 118.960±15.32 309.790±0.00 58.202±9.27
ENSMUST00000176849 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176888 N/A N/A N/A N/A 55.379±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177019 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177051 N/A N/A N/A 70.161±0.00 N/A N/A N/A N/A N/A N/A N/A 100.838±0.00 145.272±59.31 22.899±0.00
ENSMUST00000177060 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177117 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177377 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177497 N/A N/A N/A N/A 16.874±0.91 14.749±3.07 N/A N/A N/A 17.988±0.00 N/A 25.383±0.00 31.623±11.00 8.526±0.00
ENSMUSG00000021553 ENSMUST00000022036 1.145±0.80 0.034±0.01 0.043±0.01 0.063±0.03 0.434±0.09 1.568±0.31 0.044±0.01 0.014±0.00 0.015±0.01 0.714±0.50 0.011±0.00 2.685±1.08 0.981±0.60 0.398±0.17
ENSMUST00000140760 N/A N/A N/A N/A N/A N/A 0.045±0.00 N/A N/A N/A N/A N/A N/A 0.809±0.13
ENSMUST00000148396 N/A N/A N/A 0.009±0.00 N/A N/A N/A N/A N/A 0.084±0.00 N/A N/A N/A 0.165±0.00
ENSMUST00000151675 0.022±0.00 N/A 0.013±0.00 0.074±0.00 N/A N/A 0.041±0.00 0.022±0.00 0.039±0.00 N/A 0.025±0.00 0.532±0.00 N/A N/A

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