C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006HO_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000197506-ENSG00000148053 CGP 9606 9:84275457-85027070
GeneTranscriptPositionBiotype
ENSG00000148053 (NTRK2)
neurotrophic tyrosine kinase, receptor, type 2 		ENST00000277120 (NTRK2-004) 84669778-85027070 protein_coding
ENST00000304053 (NTRK2-003) 84669778-84877898 protein_coding
ENST00000323115 (NTRK2-001) 84670396-85022323 protein_coding
ENST00000359847 (NTRK2-005) 84670660-84815702 protein_coding
ENST00000376208 (NTRK2-002) 84669778-84877898 protein_coding
ENST00000376213 (NTRK2-201) 84668551-85023590 protein_coding
ENST00000376214 (NTRK2-202) 84668551-85023590 protein_coding
ENST00000395882 (NTRK2-203) 84669711-84815706 protein_coding
ENSG00000197506 (SLC28A3)
solute carrier family 28 (concentrative nucleoside transporter), member 3 		ENST00000376238 (SLC28A3-001) 84275457-84340683 protein_coding
ENST00000495823 (SLC28A3-002) 84305276-84340659 processed_transcript
ENSG00000228095 (RP11-361M4.1)
 ENST00000423044 (RP11-361M4.1-001) 84604111-84604425 processed_pseudogene
CIL_0006HO_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021553-ENSMUSG00000055254 CGP 10090 13:58545399-59133970
GeneTranscriptPositionBiotype
ENSMUSG00000021553 (Slc28a3)
solute carrier family 28 (sodium-coupled nucleoside transporter), member 3 		ENSMUST00000022036 (Slc28a3-001) 58553305-58610877 protein_coding
ENSMUST00000140760 (Slc28a3-004) 58545399-58558267 nonsense_mediated_decay
ENSMUST00000148396 (Slc28a3-002) 58581690-58610877 nonsense_mediated_decay
ENSMUST00000151675 (Slc28a3-003) 58586683-58610869 retained_intron
ENSMUSG00000055254 (Ntrk2)
neurotrophic tyrosine kinase, receptor, type 2 		ENSMUST00000079828 (Ntrk2-201) 58807900-59133970 protein_coding
ENSMUST00000109838 (Ntrk2-202) 58806596-58937030 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006HO_0001ENSG00000148053ENST00000277120ENST00000304053ENST00000323115ENST00000359847ENST00000376208ENST00000376213ENST00000376214ENST00000395882ENSG00000197506ENST00000376238ENST00000495823ENSG00000228095ENST00000423044CIL_0006HO_0002ENSMUSG00000021553ENSMUST00000022036ENSMUST00000140760ENSMUST00000148396ENSMUST00000151675ENSMUSG00000055254ENSMUST00000079828ENSMUST00000109838
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006HO_0001ENSG00000148053ENST00000277120ENST00000323115ENST00000359847ENST00000376213ENST00000395882ENSG00000197506ENST00000376238ENST00000495823ENSG00000228095ENST00000423044CIL_0006HO_0002ENSMUSG00000021553ENSMUST00000022036ENSMUST00000140760ENSMUST00000148396ENSMUST00000151675ENSMUSG00000055254ENSMUST00000079828ENSMUST00000109838
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000148053 ENST00000277120 N/A N/A N/A 23.341±4.45 N/A N/A N/A 0.080±0.00 N/A N/A N/A N/A N/A N/A
ENST00000304053 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000323115 N/A N/A N/A 33.043±0.00 N/A 0.563±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000359847 2.266±0.00 4.529±0.00 7.015±0.00 57.660±12.18 5.999±0.43 1.395±0.40 1.229±0.11 3.574±2.99 6.342±0.00 1.207±0.07 0.759±0.41 3.258±2.56 0.420±0.19 5.041±3.66
ENST00000376208 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000376213 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.397±0.00 N/A N/A N/A
ENST00000376214 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000395882 9.087±0.00 1.651±0.00 N/A 58.515±0.00 22.317±0.00 2.440±0.00 0.846±0.64 4.445±0.00 0.205±0.00 4.610±0.00 0.960±0.00 1.830±0.84 N/A N/A
ENSG00000197506 ENST00000376238 0.055±0.00 0.043±0.00 N/A 0.056±0.00 0.660±0.00 0.091±0.07 0.044±0.01 0.060±0.00 0.064±0.02 0.143±0.06 0.010±0.00 0.653±0.42 0.187±0.15 0.173±0.04
ENST00000495823 N/A N/A N/A 0.118±0.00 0.560±0.00 N/A N/A N/A 0.282±0.00 0.367±0.00 N/A N/A 0.018±0.00 0.188±0.00
ENSG00000228095 ENST00000423044 N/A N/A N/A N/A N/A 0.100±0.00 N/A N/A N/A N/A N/A N/A N/A 0.033±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021553 ENSMUST00000022036 1.145±0.80 0.034±0.01 0.043±0.01 0.063±0.03 0.434±0.09 1.568±0.31 0.044±0.01 0.014±0.00 0.015±0.01 0.714±0.50 0.011±0.00 2.685±1.08 0.981±0.60 0.398±0.17
ENSMUST00000140760 N/A N/A N/A N/A N/A N/A 0.045±0.00 N/A N/A N/A N/A N/A N/A 0.809±0.13
ENSMUST00000148396 N/A N/A N/A 0.009±0.00 N/A N/A N/A N/A N/A 0.084±0.00 N/A N/A N/A 0.165±0.00
ENSMUST00000151675 0.022±0.00 N/A 0.013±0.00 0.074±0.00 N/A N/A 0.041±0.00 0.022±0.00 0.039±0.00 N/A 0.025±0.00 0.532±0.00 N/A N/A
ENSMUSG00000055254 ENSMUST00000079828 N/A N/A N/A 10.600±6.17 N/A N/A N/A N/A 0.025±0.00 N/A N/A N/A N/A 0.070±0.01
ENSMUST00000109838 18.293±0.37 2.790±1.78 0.308±0.06 10.495±6.44 14.428±8.09 0.251±0.03 0.283±0.09 0.459±0.14 0.447±0.45 2.011±0.40 0.235±0.10 3.555±0.75 0.176±0.15 0.198±0.07

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