C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: general transcription factor II H, polypeptide 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000021639 Gtf2h2 10090 - 13:100460218-100492579 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000066940 Gtf2h2-006 100481529-100492579 protein_coding
  ENSMUST00000066984 Gtf2h2-001 100468580-100492561 protein_coding
  ENSMUST00000124644 Gtf2h2-008 100479191-100481649 processed_transcript
  ENSMUST00000124698 Gtf2h2-009 100477102-100480731 processed_transcript
  ENSMUST00000134842 Gtf2h2-002 100468808-100492579 nonsense_mediated_decay
  ENSMUST00000142182 Gtf2h2-004 100468808-100492367 retained_intron
  ENSMUST00000145266 Gtf2h2-003 100460218-100492338 nonsense_mediated_decay
  ENSMUST00000147229 Gtf2h2-005 100487700-100492374 retained_intron
  ENSMUST00000152049 Gtf2h2-007 100488787-100492553 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000066940ENSMUST00000066984ENSMUST00000124644ENSMUST00000124698ENSMUST00000134842ENSMUST00000142182ENSMUST00000145266ENSMUST00000147229ENSMUST00000152049
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000066940 N/A N/A N/A 2.179±0.00 N/A N/A N/A N/A N/A N/A N/A 5.666±0.00 3.982±1.22 5.399±0.00
ENSMUST00000066984 1.831±0.00 2.348±0.49 3.712±1.05 7.790±1.95 1.763±0.59 0.872±0.00 1.906±0.48 3.401±1.52 5.848±3.24 2.791±0.68 1.145±0.23 4.376±1.33 5.741±1.84 5.172±1.93
ENSMUST00000124644 3.512±0.79 3.435±1.17 N/A N/A 2.945±0.00 3.019±1.15 2.231±0.00 3.855±0.05 1.863±0.00 3.354±0.40 N/A 5.520±1.77 N/A N/A
ENSMUST00000124698 N/A 6.251±1.18 N/A N/A 8.099±2.63 4.723±1.58 N/A 11.289±1.51 5.480±0.22 4.915±0.00 N/A 9.604±2.96 N/A N/A
ENSMUST00000134842 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.120±0.00 N/A N/A
ENSMUST00000142182 3.121±1.05 1.772±0.69 N/A N/A 2.079±0.93 2.118±0.81 1.340±0.00 3.359±1.45 2.889±0.83 2.122±0.00 N/A 4.087±1.20 N/A 1.441±0.00
ENSMUST00000145266 1.585±0.00 N/A N/A 2.004±0.00 2.599±1.90 1.047±0.00 N/A 2.209±0.00 2.698±0.00 1.173±0.00 N/A 2.336±0.98 2.710±0.69 N/A
ENSMUST00000147229 1.498±0.00 1.108±0.23 N/A N/A 1.258±0.00 0.992±0.16 N/A N/A N/A 1.389±0.00 N/A 1.318±0.06 N/A N/A
ENSMUST00000152049 N/A N/A N/A 38.211±0.00 N/A N/A N/A N/A N/A N/A N/A 70.126±0.00 69.315±31.13 96.055±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004ZF CIL_0004ZF_0002 CGP 13:100407770-100492579

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000439 IEA core TFIIH complex
GO:0004672 ISS protein kinase activity
GO:0005675 ISS holo TFIIH complex
GO:0006200 ISS ATP catabolic process
GO:0006289 IEA nucleotide-excision repair
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 ISS transcription from RNA polymerase II promoter
GO:0006468 ISS protein phosphorylation
GO:0008094 ISS DNA-dependent ATPase activity
GO:0008270 IEA zinc ion binding
GO:0008353 ISS RNA polymerase II carboxy-terminal domain kinase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016514 gtf2h2 general transcription factor IIH, polypeptide 2 protein_coding Danio_rerio
ENSG00000145736 GTF2H2 general transcription factor IIH, polypeptide 2, 44kDa protein_coding Homo_sapiens
ENSG00000183474 GTF2H2C GTF2H2 family member C protein_coding Homo_sapiens

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