C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: general transcription factor II H, polypeptide 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000066984 Gtf2h2-001 ENSMUSG00000021639 10090 - 13:100468580-100492561 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000066984
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000066984 1.831±0.00 2.348±0.49 3.712±1.05 7.790±1.95 1.763±0.59 0.872±0.00 1.906±0.48 3.401±1.52 5.848±3.24 2.791±0.68 1.145±0.23 4.376±1.33 5.741±1.84 5.172±1.93

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004ZF CIL_0004ZF_0002 CGP 13:100407770-100492579

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000439 IEA core TFIIH complex
GO:0004672 ISS protein kinase activity
GO:0005675 ISS holo TFIIH complex
GO:0006200 ISS ATP catabolic process
GO:0006289 IEA nucleotide-excision repair
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 ISS transcription from RNA polymerase II promoter
GO:0006468 ISS protein phosphorylation
GO:0008094 ISS DNA-dependent ATPase activity
GO:0008270 IEA zinc ion binding
GO:0008353 ISS RNA polymerase II carboxy-terminal domain kinase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000274400 GTF2H2-001 protein_coding Homo_sapiens 0 1568
ENST00000330280 GTF2H2-003 protein_coding Homo_sapiens 0 1568
ENST00000380729 GTF2H2C-004 protein_coding Homo_sapiens 0 1568
ENST00000425596 GTF2H2-201 protein_coding Homo_sapiens 0 1327
ENST00000446221 GTF2H2C-006 nonsense_mediated_decay Homo_sapiens 0 1321
ENST00000502599 GTF2H2C-016 retained_intron Homo_sapiens 0 193
ENST00000502619 GTF2H2C-003 retained_intron Homo_sapiens 0 782
ENST00000503604 GTF2H2C-008 retained_intron Homo_sapiens 0 595
ENST00000504712 GTF2H2B-004 processed_transcript Homo_sapiens 0 276
ENST00000506129 GTF2H2C-011 nonsense_mediated_decay Homo_sapiens 0 579
ENST00000507549 GTF2H2B-002 processed_transcript Homo_sapiens 0 667
ENST00000507595 GTF2H2C-013 protein_coding Homo_sapiens 0 645
ENST00000508065 GTF2H2B-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 1574
ENST00000508325 GTF2H2C-010 retained_intron Homo_sapiens 0 361
ENST00000508592 GTF2H2-020 retained_intron Homo_sapiens 0 193
ENST00000510979 GTF2H2C-001 protein_coding Homo_sapiens 0 1568
ENST00000511629 GTF2H2C-005 nonsense_mediated_decay Homo_sapiens 0 276
ENST00000512736 GTF2H2C-007 protein_coding Homo_sapiens 0 669
ENST00000513202 GTF2H2B-003 processed_transcript Homo_sapiens 0 1327
ENST00000514069 GTF2H2C-012 nonsense_mediated_decay Homo_sapiens 0 291
ENST00000514162 GTF2H2C-014 protein_coding Homo_sapiens 0 525
ENST00000517900 GTF2H2-016 protein_coding Homo_sapiens 0 525
ENST00000518898 GTF2H2-004 nonsense_mediated_decay Homo_sapiens 0 900
ENST00000519783 GTF2H2-002 nonsense_mediated_decay Homo_sapiens 0 1321
ENST00000521858 GTF2H2-011 retained_intron Homo_sapiens 0 276
ENST00000521942 GTF2H2-008 retained_intron Homo_sapiens 0 902
ENST00000522654 GTF2H2-009 retained_intron Homo_sapiens 0 782
ENST00000523003 GTF2H2-010 retained_intron Homo_sapiens 0 669
ENST00000523693 GTF2H2-024 retained_intron Homo_sapiens 0 361
ENST00000610491 GTF2H2C_2-002 retained_intron Homo_sapiens 0 776
ENST00000611072 GTF2H2-020 retained_intron Homo_sapiens 0 193
ENST00000611753 GTF2H2-008 retained_intron Homo_sapiens 0 902
ENST00000612211 GTF2H2C_2-007 protein_coding Homo_sapiens 0 669
ENST00000612324 GTF2H2C_2-005 nonsense_mediated_decay Homo_sapiens 0 276
ENST00000612581 GTF2H2-202 protein_coding Homo_sapiens 0 1574
ENST00000612808 GTF2H2-009 retained_intron Homo_sapiens 0 782
ENST00000616295 GTF2H2C_2-003 retained_intron Homo_sapiens 0 850
ENST00000616846 GTF2H2-002 nonsense_mediated_decay Homo_sapiens 0 1327
ENST00000617228 GTF2H2-001 protein_coding Homo_sapiens 0 1574
ENST00000619345 GTF2H2-011 retained_intron Homo_sapiens 0 276
ENST00000619699 GTF2H2C_2-004 protein_coding Homo_sapiens 0 1563
ENST00000619880 GTF2H2C_2-006 nonsense_mediated_decay Homo_sapiens 0 1315
ENST00000619997 GTF2H2-018 protein_coding Homo_sapiens 0 1574
ENST00000620205 GTF2H2-024 retained_intron Homo_sapiens 0 361
ENST00000621406 GTF2H2C_2-001 protein_coding Homo_sapiens 0 1563
ENST00000621491 GTF2H2-016 protein_coding Homo_sapiens 0 525
ENST00000622222 GTF2H2-010 retained_intron Homo_sapiens 0 669

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