C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: kinectin 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000021843 Ktn1 10090 + 14:47648448-47736564 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000022391 Ktn1-201 47663756-47736563 protein_coding
  ENSMUST00000185343 Ktn1-010 47663787-47736291 protein_coding
  ENSMUST00000185940 Ktn1-012 47663787-47736291 protein_coding
  ENSMUST00000186466 Ktn1-022 47649316-47664315 protein_coding
  ENSMUST00000186627 Ktn1-006 47663787-47736288 protein_coding
  ENSMUST00000186700 Ktn1-021 47705655-47715476 retained_intron
  ENSMUST00000186761 Ktn1-018 47663787-47736293 protein_coding
  ENSMUST00000187039 Ktn1-015 47663787-47736291 protein_coding
  ENSMUST00000187262 Ktn1-013 47663787-47736289 protein_coding
  ENSMUST00000187839 Ktn1-003 47648448-47736557 protein_coding
  ENSMUST00000188049 Ktn1-024 47714677-47724884 retained_intron
  ENSMUST00000188263 Ktn1-025 47724768-47726243 retained_intron
  ENSMUST00000188330 Ktn1-009 47663787-47736279 protein_coding
  ENSMUST00000188553 Ktn1-011 47663787-47736291 protein_coding
  ENSMUST00000189101 Ktn1-017 47663787-47736293 protein_coding
  ENSMUST00000189533 Ktn1-014 47663787-47736291 protein_coding
  ENSMUST00000189986 Ktn1-001 47649394-47736564 nonsense_mediated_decay
  ENSMUST00000190164 Ktn1-023 47700641-47704437 retained_intron
  ENSMUST00000190182 Ktn1-004 47663787-47736291 protein_coding
  ENSMUST00000190252 Ktn1-002 47649311-47736557 protein_coding
  ENSMUST00000190535 Ktn1-005 47663787-47736291 protein_coding
  ENSMUST00000190857 Ktn1-020 47729659-47736561 retained_intron
  ENSMUST00000190999 Ktn1-008 47663787-47736291 protein_coding
  ENSMUST00000191018 Ktn1-007 47663787-47736284 protein_coding
  ENSMUST00000191446 Ktn1-019 47663787-47736287 protein_coding
  ENSMUST00000191511 Ktn1-016 47663787-47736291 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000022391ENSMUST00000185343ENSMUST00000186627ENSMUST00000186761ENSMUST00000187262ENSMUST00000188330ENSMUST00000188553ENSMUST00000189986ENSMUST00000190182ENSMUST00000190252ENSMUST00000190857
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000022391 N/A N/A 6.388±0.66 N/A N/A N/A N/A N/A 0.968±0.14 N/A 9.728±0.63 11.049±0.43 6.156±3.13 N/A
ENSMUST00000185343 N/A N/A N/A 5.072±0.37 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000186627 N/A N/A 5.129±0.41 N/A N/A N/A N/A N/A 1.862±0.31 N/A N/A 4.897±1.04 6.836±2.96 N/A
ENSMUST00000186761 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.920±0.00 15.239±0.00 20.674±0.00 6.125±0.00
ENSMUST00000187262 N/A N/A N/A 16.069±0.00 N/A N/A N/A N/A 1.569±0.00 N/A 6.337±0.00 35.371±0.00 19.028±12.24 2.864±0.00
ENSMUST00000188330 N/A N/A N/A 24.820±0.00 N/A N/A N/A N/A N/A N/A N/A 3.836±0.00 N/A N/A
ENSMUST00000188553 N/A N/A N/A 22.982±0.00 N/A N/A N/A N/A N/A N/A 7.581±0.83 N/A N/A 4.159±0.00
ENSMUST00000189986 N/A N/A N/A N/A N/A N/A N/A N/A 1.028±0.14 N/A N/A 4.409±0.54 N/A N/A
ENSMUST00000190182 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 27.801±0.00 15.734±9.64 N/A
ENSMUST00000190252 1.755±1.29 5.202±1.17 5.095±0.58 7.148±0.34 2.033±0.35 1.075±0.00 6.392±0.66 0.818±0.53 1.380±0.57 2.598±0.37 11.972±1.40 2.869±1.40 4.760±1.70 N/A
ENSMUST00000190857 1.472±0.39 1.459±0.22 4.434±0.85 6.293±0.82 2.810±1.36 1.322±0.62 3.268±0.35 0.676±0.13 0.985±0.54 1.435±0.26 N/A 2.647±1.13 N/A 0.142±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000604 CIL_000604_0003 CGP 14:47648448-48260883

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005783 IDA endoplasmic reticulum
GO:0007018 TAS microtubule-based movement
GO:0016020 IEA membrane
GO:0019894 TAS kinesin binding
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000032802 ktn1 kinectin 1 protein_coding Danio_rerio
ENSG00000126777 KTN1 kinectin 1 (kinesin receptor) protein_coding Homo_sapiens

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