C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000022544 Hmbox1-006 ENSMUSG00000021972 10090 - 14:64811600-64949850 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000022544
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000022544 4.596±0.00 3.935±0.07 8.830±0.00 7.258±0.28 8.353±0.00 4.278±0.00 6.547±0.42 2.238±0.66 15.238±0.00 7.623±1.57 6.269±3.87 2.692±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002UV CIL_0002UV_0002 CGP 14:64652531-64949871

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0045893 IEA positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000287701 HMBOX1-002 protein_coding Homo_sapiens 0 1951
ENST00000355231 HMBOX1-017 protein_coding Homo_sapiens 0 1620
ENST00000397358 HMBOX1-001 protein_coding Homo_sapiens 0 1642
ENST00000403668 HMBOX1-201 protein_coding Homo_sapiens 0 1642
ENST00000517386 HMBOX1-010 processed_transcript Homo_sapiens 0 268
ENST00000518080 HMBOX1-009 processed_transcript Homo_sapiens 0 444
ENST00000519047 HMBOX1-005 protein_coding Homo_sapiens 0 1655
ENST00000519662 HMBOX1-008 protein_coding Homo_sapiens 0 525
ENST00000521516 HMBOX1-004 nonsense_mediated_decay Homo_sapiens 0 1291
ENST00000522468 HMBOX1-012 nonsense_mediated_decay Homo_sapiens 1e-21 108
ENST00000523613 HMBOX1-003 protein_coding Homo_sapiens 0 1945
ENST00000524238 HMBOX1-006 protein_coding Homo_sapiens 0 1574
ENST00000558662 HMBOX1-014 protein_coding Homo_sapiens 0 1930
ENST00000560269 HMBOX1-011 processed_transcript Homo_sapiens 0 608
ENST00000560357 HMBOX1-016 retained_intron Homo_sapiens 0 1031
ENST00000560599 HMBOX1-015 protein_coding Homo_sapiens 0 1681

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