C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000176128 Hmbox1-001 ENSMUSG00000021972 10090 - 14:64822218-64949871 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; PlacentaTestisENSMUST00000176128
Transcript ID Placenta Testis
ENSMUST00000176128 7.132±0.00 2.249±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002UV CIL_0002UV_0002 CGP 14:64652531-64949871

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0045893 IEA positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000287701 HMBOX1-002 protein_coding Homo_sapiens 0 2948
ENST00000355231 HMBOX1-017 protein_coding Homo_sapiens 0 1620
ENST00000397358 HMBOX1-001 protein_coding Homo_sapiens 0 2632
ENST00000403668 HMBOX1-201 protein_coding Homo_sapiens 0 1648
ENST00000517386 HMBOX1-010 processed_transcript Homo_sapiens 0 270
ENST00000518080 HMBOX1-009 processed_transcript Homo_sapiens 0 444
ENST00000519047 HMBOX1-005 protein_coding Homo_sapiens 0 1655
ENST00000519662 HMBOX1-008 protein_coding Homo_sapiens 0 525
ENST00000521516 HMBOX1-004 nonsense_mediated_decay Homo_sapiens 0 1336
ENST00000522468 HMBOX1-012 nonsense_mediated_decay Homo_sapiens 0 209
ENST00000523613 HMBOX1-003 protein_coding Homo_sapiens 0 1947
ENST00000524238 HMBOX1-006 protein_coding Homo_sapiens 0 1580
ENST00000558662 HMBOX1-014 protein_coding Homo_sapiens 0 1941
ENST00000560269 HMBOX1-011 processed_transcript Homo_sapiens 0 608
ENST00000560357 HMBOX1-016 retained_intron Homo_sapiens 0 1031
ENST00000560599 HMBOX1-015 protein_coding Homo_sapiens 0 1681

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