C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cadherin 10
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022321 Cdh10 10090 + 15:18818947-19014236 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000040562 Cdh10-002 18820329-19014236 protein_coding
  ENSMUST00000166873 Cdh10-001 18818947-19014236 protein_coding
  ENSMUST00000176146 Cdh10-003 18899589-19013682 nonsense_mediated_decay
  ENSMUST00000176409 Cdh10-006 19006980-19014236 retained_intron
  ENSMUST00000176593 Cdh10-005 18818977-18969550 retained_intron
  ENSMUST00000176801 Cdh10-004 18818958-18903109 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000040562ENSMUST00000166873ENSMUST00000176146ENSMUST00000176409
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000040562 N/A N/A 0.024±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000166873 2.034±0.32 N/A 0.142±0.04 5.532±1.17 N/A N/A 0.052±0.02 N/A 0.011±0.01 N/A N/A 0.173±0.18 0.013±0.01 N/A
ENSMUST00000176146 0.582±0.00 0.057±0.00 N/A 15.530±0.00 0.096±0.02 N/A N/A 0.053±0.02 0.024±0.00 0.044±0.00 0.020±0.00 0.125±0.09 N/A 0.031±0.01
ENSMUST00000176409 0.019±0.00 0.062±0.00 N/A N/A 0.152±0.00 0.096±0.06 0.016±0.00 0.056±0.00 0.020±0.01 0.037±0.01 0.016±0.00 0.174±0.14 0.011±0.01 0.057±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006MJ CIL_0006MJ_0004 CGP 15:16778101-19014236

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014522 cdh6 cadherin 6 protein_coding Danio_rerio
ENSDARG00000055843 cdh10 cadherin 10, type 2 (T2-cadherin) protein_coding Danio_rerio
ENSDARG00000091395 CABZ01067945.1 Uncharacterized protein protein_coding Danio_rerio
ENSG00000040731 CDH10 cadherin 10, type 2 (T2-cadherin) protein_coding Homo_sapiens

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