C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cadherin 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000166873 Cdh10-001 ENSMUSG00000022321 10090 + 15:18818947-19014236 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainHeartLiverOvaryPlacentaENSMUST00000166873
Transcript ID Adipose Bladder Brain Heart Liver Ovary Placenta
ENSMUST00000166873 2.034±0.32 0.142±0.04 5.532±1.17 0.052±0.02 0.011±0.01 0.173±0.18 0.013±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006MJ CIL_0006MJ_0004 CGP 15:16778101-19014236

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264463 CDH10-001 protein_coding Homo_sapiens 0 3570
ENST00000265071 CDH6-001 protein_coding Homo_sapiens 0 501
ENST00000502921 CDH10-003 processed_transcript Homo_sapiens 0 1653
ENST00000503958 CDH10-004 retained_intron Homo_sapiens 0 1044
ENST00000508132 CDH6-004 retained_intron Homo_sapiens 0 292
ENST00000510477 CDH10-002 nonsense_mediated_decay Homo_sapiens 0 1674
ENST00000514738 CDH6-003 protein_coding Homo_sapiens 0 501

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