C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cadherin 10, type 2 (T2-cadherin)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000040731 CDH10 9606 - 5:24487100-24644978 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000264463 CDH10-001 24487100-24644978 protein_coding
  ENST00000502921 CDH10-003 24487146-24499521 processed_transcript
  ENST00000503958 CDH10-004 24487532-24492963 retained_intron
  ENST00000510477 CDH10-002 24487348-24644780 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000264463ENST00000502921ENST00000503958ENST00000510477
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000264463 N/A N/A 2.993±1.01 N/A 0.012±0.00 N/A 0.020±0.00 0.048±0.00 0.036±0.00 N/A 0.054±0.00 0.248±0.12
ENST00000502921 0.011±0.00 0.033±0.00 N/A 0.013±0.00 0.066±0.00 0.012±0.00 0.060±0.00 N/A N/A 0.028±0.02 N/A N/A
ENST00000503958 N/A N/A 2.724±0.00 N/A N/A N/A 0.034±0.00 N/A N/A N/A N/A N/A
ENST00000510477 0.005±0.00 N/A 1.537±0.44 N/A 0.071±0.00 0.028±0.00 N/A N/A N/A 0.013±0.00 0.048±0.03 0.161±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006MJ CIL_0006MJ_0002 CGP 5:24487100-27121150

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 TAS plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016337 NAS single organismal cell-cell adhesion
GO:0034329 TAS cell junction assembly
GO:0034332 TAS adherens junction organization
GO:0045216 TAS cell-cell junction organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014522 cdh6 cadherin 6 protein_coding Danio_rerio
ENSDARG00000055843 cdh10 cadherin 10, type 2 (T2-cadherin) protein_coding Danio_rerio
ENSDARG00000091395 CABZ01067945.1 Uncharacterized protein protein_coding Danio_rerio
ENSMUSG00000022321 Cdh10 cadherin 10 protein_coding Mus_musculus

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