C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cadherin 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000014522 cdh6 7955 - 2:28216925-28270171 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000013638 cdh6-201 28217948-28270171 protein_coding
  ENSDART00000131506 cdh6-001 28216925-28253763 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyMuscleENSDART00000013638ENSDART00000131506
Transcript ID Brain Heart Kidney Muscle
ENSDART00000013638 1.282±0.00 0.310±0.00 N/A 0.769±0.00
ENSDART00000131506 5.295±3.77 1.134±0.38 2.812±1.86 0.890±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006MJ CIL_0006MJ_0001 CGP 2:28216925-28649116

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007155 IEA cell adhesion
GO:0007156 IEA homophilic cell adhesion
GO:0016020 IEA membrane
GO:0016021 IEA integral to membrane
GO:0048793 IMP pronephros development
GO:0060042 IMP retina morphogenesis in camera-type eye

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000040731 CDH10 cadherin 10, type 2 (T2-cadherin) protein_coding Homo_sapiens
ENSG00000113100 CDH9 cadherin 9, type 2 (T1-cadherin) protein_coding Homo_sapiens
ENSG00000113361 CDH6 cadherin 6, type 2, K-cadherin (fetal kidney) protein_coding Homo_sapiens
ENSMUSG00000022321 Cdh10 cadherin 10 protein_coding Mus_musculus
ENSMUSG00000025370 Cdh9 cadherin 9 protein_coding Mus_musculus
ENSMUSG00000039385 Cdh6 cadherin 6 protein_coding Mus_musculus

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