C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tubulin tyrosine ligase-like 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022442 Ttll1 10090 - 15:83483772-83510893 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000016897 Ttll1-001 83483772-83510893 protein_coding
  ENSMUST00000109479 Ttll1-005 83491874-83510874 protein_coding
  ENSMUST00000109480 Ttll1-002 83483828-83510881 protein_coding
  ENSMUST00000131380 Ttll1-003 83505582-83510883 processed_transcript
  ENSMUST00000154401 Ttll1-004 83502136-83510793 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000016897ENSMUST00000109480ENSMUST00000154401
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000016897 5.534±0.43 2.529±0.50 5.170±2.34 17.762±3.23 3.562±0.57 2.875±0.68 15.345±2.30 4.032±0.58 2.116±1.17 5.392±0.21 1.154±0.21 5.393±1.84 2.954±1.39 10.824±2.18
ENSMUST00000109480 N/A 0.480±0.00 N/A N/A 1.310±0.00 1.032±0.53 N/A 0.879±0.00 N/A N/A 0.339±0.01 3.106±0.55 0.470±0.00 N/A
ENSMUST00000154401 N/A N/A N/A 14.008±0.00 N/A N/A N/A N/A N/A N/A N/A 4.511±0.00 3.035±0.03 15.256±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008LG CIL_0008LG_0002 VISTA 15:83223007-83824071
CIL_0008W4 CIL_0008W4_0002 VISTA 15:83338828-83940718
CIL_0004LJ CIL_0004LJ_0002 CGP 15:83375607-83510893
CIL_0004LI CIL_0004LI_0002 CGP 15:83483772-83544635

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003351 IMP epithelial cilium movement
GO:0005515 IPI protein binding
GO:0005575 ND cellular_component
GO:0005737 IEA cytoplasm
GO:0005874 IEA microtubule
GO:0016874 IEA ligase activity
GO:0018095 IMP protein polyglutamylation
GO:0035082 IMP axoneme assembly
GO:0044782 IMP cilium organization
GO:0060271 IMP cilium morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000090778 ttll1 tubulin tyrosine ligase-like family, member 1 protein_coding Danio_rerio
ENSG00000100271 TTLL1 tubulin tyrosine ligase-like family, member 1 protein_coding Homo_sapiens

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