C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004LJ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000100266-ENSG00000100271 CGP 9606 22:42835412-43089428
GeneTranscriptPositionBiotype
ENSG00000100266 (PACSIN2)
protein kinase C and casein kinase substrate in neurons 2 		ENST00000263246 (PACSIN2-001) 42869771-43015145 protein_coding
ENST00000337959 (PACSIN2-201) 42869768-42947041 protein_coding
ENST00000402229 (PACSIN2-004) 42871128-42959878 protein_coding
ENST00000403744 (PACSIN2-005) 42870930-42947041 protein_coding
ENST00000407585 (PACSIN2-003) 42869775-42959881 protein_coding
ENST00000418133 (PACSIN2-009) 42890944-42945873 protein_coding
ENST00000422336 (PACSIN2-006) 42890944-43002440 protein_coding
ENST00000445706 (PACSIN2-010) 42893457-43015098 nonsense_mediated_decay
ENST00000453079 (PACSIN2-008) 42893574-42959899 protein_coding
ENST00000453643 (PACSIN2-007) 42890935-43015135 protein_coding
ENST00000507586 (PACSIN2-015) 42835412-42876207 nonsense_mediated_decay
ENSG00000100271 (TTLL1)
tubulin tyrosine ligase-like family, member 1 		ENST00000266254 (TTLL1-001) 43039644-43089428 protein_coding
ENST00000331018 (TTLL1-201) 43039776-43075586 protein_coding
ENST00000439248 (TTLL1-003) 43039644-43089338 nonsense_mediated_decay
ENST00000440761 (TTLL1-002) 43039669-43089419 nonsense_mediated_decay
ENSG00000226989 (AL049758.2)
 ENST00000423154 (AL049758.2-001) 42853403-42853799 processed_pseudogene
ENSG00000230319 (AL022476.2)
 ENST00000443063 (AL022476.2-001) 43038585-43052366 antisense
ENSG00000242247 (ARFGAP3)
ADP-ribosylation factor GTPase activating protein 3 		ENST00000263245 (ARFGAP3-001) 42796502-42857402 protein_coding
ENST00000435208 (ARFGAP3-004) 42835413-42858106 protein_coding
ENST00000437119 (ARFGAP3-010) 42797414-42857239 protein_coding
ENST00000453516 (ARFGAP3-005) 42807074-42831652 protein_coding
ENST00000454099 (ARFGAP3-003) 42823656-42857268 protein_coding
ENST00000493606 (ARFGAP3-002) 42847234-42857294 retained_intron
CIL_0004LJ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000016664-ENSMUSG00000022442 CGP 10090 15:83375607-83510893
GeneTranscriptPositionBiotype
ENSMUSG00000016664 (Pacsin2)
protein kinase C and casein kinase substrate in neurons 2 		ENSMUST00000056177 (Pacsin2-201) 83376122-83464570 protein_coding
ENSMUST00000165095 (Pacsin2-202) 83375607-83432850 protein_coding
ENSMUST00000171436 (Pacsin2-203) 83375607-83464606 protein_coding
ENSMUSG00000022442 (Ttll1)
tubulin tyrosine ligase-like 1 		ENSMUST00000016897 (Ttll1-001) 83483772-83510893 protein_coding
ENSMUST00000109479 (Ttll1-005) 83491874-83510874 protein_coding
ENSMUST00000109480 (Ttll1-002) 83483828-83510881 protein_coding
ENSMUST00000131380 (Ttll1-003) 83505582-83510883 processed_transcript
ENSMUST00000154401 (Ttll1-004) 83502136-83510793 protein_coding
ENSMUSG00000049414 (Gm5417)
predicted gene 5417 		ENSMUST00000079706 (Gm5417-201) 83405612-83406105 pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004LJ_0001ENSG00000100266ENST00000263246ENST00000337959ENST00000402229ENST00000403744ENST00000407585ENST00000418133ENST00000422336ENST00000445706ENST00000453079ENST00000453643ENST00000507586ENSG00000100271ENST00000266254ENST00000331018ENST00000439248ENST00000440761ENSG00000226989ENST00000423154ENSG00000230319ENST00000443063ENSG00000242247ENST00000263245ENST00000435208ENST00000437119ENST00000453516ENST00000454099ENST00000493606CIL_0004LJ_0002ENSMUSG00000016664ENSMUST00000056177ENSMUST00000165095ENSMUST00000171436ENSMUSG00000022442ENSMUST00000016897ENSMUST00000109479ENSMUST00000109480ENSMUST00000131380ENSMUST00000154401ENSMUSG00000049414ENSMUST00000079706
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004LJ_0001ENSG00000100266ENST00000263246ENST00000337959ENST00000402229ENSG00000100271ENST00000266254ENST00000331018ENST00000439248ENST00000440761ENSG00000226989ENST00000423154ENSG00000230319ENST00000443063ENSG00000242247ENST00000263245ENST00000437119ENST00000453516CIL_0004LJ_0002ENSMUSG00000016664ENSMUST00000056177ENSMUST00000165095ENSMUST00000171436ENSMUSG00000022442ENSMUST00000016897ENSMUST00000109480ENSMUST00000154401ENSMUSG00000049414ENSMUST00000079706
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000100266 ENST00000263246 17.664±0.00 14.291±0.00 4.468±0.00 7.261±6.21 10.231±6.07 17.867±9.60 9.572±7.46 38.832±0.00 5.729±1.72 30.905±0.00 7.752±0.00 29.948±27.74 40.128±11.65 22.526±3.41
ENST00000337959 N/A N/A N/A N/A N/A 3.319±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000402229 N/A N/A N/A N/A 4.842±0.00 N/A 1.495±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000403744 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000407585 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000418133 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000422336 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000445706 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000453079 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000453643 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507586 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000100271 ENST00000266254 1.546±0.00 1.596±0.00 N/A 3.845±1.30 1.864±1.81 1.297±0.62 1.539±0.96 2.165±0.00 0.413±0.00 1.687±0.00 0.230±0.00 4.116±3.58 2.638±0.16 10.995±0.53
ENST00000331018 1.138±0.00 1.040±0.00 N/A 3.936±0.00 1.714±0.00 0.978±0.59 0.714±0.43 1.824±1.21 N/A 0.492±0.24 0.819±0.56 N/A N/A 7.425±0.00
ENST00000439248 N/A N/A 1.301±0.00 N/A N/A N/A N/A N/A N/A 0.180±0.00 N/A N/A N/A N/A
ENST00000440761 N/A 1.064±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000226989 ENST00000423154 0.179±0.00 N/A N/A 0.104±0.00 1.704±0.00 N/A 0.120±0.00 N/A N/A N/A N/A 0.175±0.00 N/A N/A
ENSG00000230319 ENST00000443063 0.207±0.00 0.387±0.00 N/A 0.336±0.00 N/A N/A N/A N/A 0.053±0.00 N/A N/A N/A N/A N/A
ENSG00000242247 ENST00000263245 12.602±0.00 8.183±0.00 N/A 7.346±3.12 8.627±0.08 9.404±2.55 5.154±2.49 17.357±9.91 7.399±1.55 17.091±7.08 7.459±4.36 15.587±6.29 12.273±0.77 22.273±0.96
ENST00000435208 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000437119 N/A N/A N/A N/A N/A N/A N/A N/A 3.621±0.00 N/A N/A 5.901±0.00 N/A N/A
ENST00000453516 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.215±0.00
ENST00000454099 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493606 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000016664 ENSMUST00000056177 4.121±0.00 4.024±0.00 5.234±0.00 8.585±6.84 3.828±0.47 7.293±0.70 9.181±0.00 10.096±1.12 6.926±4.22 9.584±2.77 2.042±0.13 28.415±15.24 39.146±24.20 13.339±2.83
ENSMUST00000165095 N/A 3.063±0.00 N/A N/A 2.741±0.00 N/A 13.756±3.76 6.110±0.30 3.759±2.34 N/A 2.097±0.47 4.258±1.22 N/A N/A
ENSMUST00000171436 9.876±6.57 6.898±0.38 5.151±0.00 6.224±5.97 4.753±1.88 13.149±5.24 8.301±0.00 16.624±8.00 10.616±8.66 10.362±2.80 2.150±1.40 10.323±5.22 21.312±8.77 6.830±2.43
ENSMUSG00000022442 ENSMUST00000016897 5.534±0.43 2.529±0.50 5.170±2.34 17.762±3.23 3.562±0.57 2.875±0.68 15.345±2.30 4.032±0.58 2.116±1.17 5.392±0.21 1.154±0.21 5.393±1.84 2.954±1.39 10.824±2.18
ENSMUST00000109479 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000109480 N/A 0.480±0.00 N/A N/A 1.310±0.00 1.032±0.53 N/A 0.879±0.00 N/A N/A 0.339±0.01 3.106±0.55 0.470±0.00 N/A
ENSMUST00000131380 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154401 N/A N/A N/A 14.008±0.00 N/A N/A N/A N/A N/A N/A N/A 4.511±0.00 3.035±0.03 15.256±0.00
ENSMUSG00000049414 ENSMUST00000079706 N/A N/A 1.560±0.00 2.609±0.00 0.196±0.06 N/A N/A N/A 2.154±0.29 N/A N/A N/A 0.371±0.00 N/A

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