C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: shisa family member 9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022494 Shisa9 10090 + 16:11984113-12270902 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000023138 Shisa9-001 11984581-12270902 protein_coding
  ENSMUST00000170672 Shisa9-002 11984581-12269949 protein_coding
  ENSMUST00000182154 Shisa9-004 11984678-11990084 processed_transcript
  ENSMUST00000182889 Shisa9-003 11984113-11995390 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023138ENSMUST00000170672ENSMUST00000182154ENSMUST00000182889
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023138 0.066±0.01 0.290±0.13 0.242±0.07 3.801±0.44 0.048±0.01 N/A 0.031±0.01 0.070±0.04 0.081±0.03 0.064±0.01 0.010±0.00 0.278±0.11 0.079±0.06 0.069±0.04
ENSMUST00000170672 0.026±0.00 0.209±0.07 N/A 2.575±0.00 0.039±0.01 0.030±0.02 0.028±0.00 0.044±0.02 0.033±0.02 0.069±0.04 N/A 0.210±0.15 0.015±0.00 0.058±0.00
ENSMUST00000182154 0.043±0.00 0.299±0.00 N/A N/A N/A N/A 0.094±0.00 N/A 0.042±0.00 0.159±0.00 N/A 0.476±0.00 N/A N/A
ENSMUST00000182889 N/A 0.353±0.13 N/A N/A 0.120±0.06 N/A 0.029±0.00 0.057±0.02 0.031±0.01 0.113±0.00 N/A 0.423±0.20 0.111±0.04 0.047±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007DX CIL_0007DX_0002 CGP 16:11984113-13150617

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0008328 IDA ionotropic glutamate receptor complex
GO:0030054 IEA cell junction
GO:0032281 IDA alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex
GO:0032591 IDA dendritic spine membrane
GO:0045202 IDA synapse
GO:0048172 IDA regulation of short-term neuronal synaptic plasticity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045145 shisa9a shisa homolog 9a (Xenopus laevis) protein_coding Danio_rerio
ENSDARG00000052642 shisa9b shisa homolog 9b protein_coding Danio_rerio
ENSG00000237515 SHISA9 shisa family member 9 protein_coding Homo_sapiens

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