C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007DX_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000237515-ENSG00000175595 CGP 9606 16:12901620-13952345
GeneTranscriptPositionBiotype
ENSG00000175595 (ERCC4)
excision repair cross-complementation group 4 		ENST00000311895 (ERCC4-001) 13920157-13952345 protein_coding
ENST00000389138 (ERCC4-004) 13932026-13948425 retained_intron
ENST00000462862 (ERCC4-002) 13937764-13948004 nonsense_mediated_decay
ENST00000573018 (ERCC4-008) 13934022-13935387 retained_intron
ENST00000574194 (ERCC4-007) 13926552-13932239 nonsense_mediated_decay
ENST00000574781 (ERCC4-006) 13927450-13930878 processed_transcript
ENST00000575156 (ERCC4-003) 13920157-13933247 protein_coding
ENST00000576348 (ERCC4-005) 13920191-13926801 retained_intron
ENSG00000237515 (SHISA9)
shisa family member 9 		ENST00000423335 (SHISA9-002) 12901757-12911650 protein_coding
ENST00000482916 (SHISA9-003) 12902879-12908910 processed_transcript
ENST00000558583 (SHISA9-001) 12901620-13240413 protein_coding
ENST00000566106 (SHISA9-005) 13082380-13235293 processed_transcript
ENSG00000242307 (RPS26P52)
ribosomal protein S26 pseudogene 52 		ENST00000463867 (RPS26P52-001) 13922332-13922679 processed_pseudogene
ENSG00000262235 (AC003009.2)
TATA element modulatory factor 1 pseudogene 1 		ENST00000576058 (AC003009.2-001) 13458326-13458698 processed_pseudogene
ENSG00000262267 (U95743.1)
 ENST00000573369 (U95743.1-001) 13730137-13779748 lincRNA
ENST00000576944 (U95743.1-003) 13730254-13779760 lincRNA
ENSG00000262732 (CTD-2135D7.2)
 ENST00000570663 (CTD-2135D7.2-001) 13930677-13935635 antisense
ENST00000575137 (CTD-2135D7.2-002) 13930677-13935610 antisense
ENSG00000262801 (U91319.1)
 ENST00000571619 (U91319.1-001) 13246316-13562918 lincRNA
ENST00000574540 (U91319.1-002) 13350555-13562912 lincRNA

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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CIL_0007DX_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000022494-ENSMUSG00000022545 CGP 10090 16:11984113-13150617
GeneTranscriptPositionBiotype
ENSMUSG00000022494 (Shisa9)
shisa family member 9 		ENSMUST00000023138 (Shisa9-001) 11984581-12270902 protein_coding
ENSMUST00000170672 (Shisa9-002) 11984581-12269949 protein_coding
ENSMUST00000182154 (Shisa9-004) 11984678-11990084 processed_transcript
ENSMUST00000182889 (Shisa9-003) 11984113-11995390 processed_transcript
ENSMUSG00000022545 (Ercc4)
excision repair cross-complementing rodent repair deficiency, complementation group 4 		ENSMUST00000023206 (Ercc4-001) 13109684-13148734 protein_coding
ENSMUST00000129049 (Ercc4-004) 13111794-13150617 nonsense_mediated_decay
ENSMUST00000138527 (Ercc4-002) 13109917-13123849 retained_intron
ENSMUST00000141024 (Ercc4-003) 13109935-13127630 nonsense_mediated_decay
ENSMUST00000156393 (Ercc4-005) 13132391-13144491 processed_transcript
ENSMUSG00000091416 (Gm6327)
predicted gene 6327 		ENSMUST00000171185 (Gm6327-001) 12760032-12761366 processed_pseudogene
ENSMUSG00000101565 (RP23-127A21.1)
RIKEN cDNA 1700003L19 gene 		ENSMUST00000190074 (RP23-127A21.1-001) 12811390-12848653 lincRNA

Mus musculus Ensembl (GRCm38)

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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007DX_0001ENSG00000175595ENST00000311895ENST00000389138ENST00000462862ENST00000573018ENST00000574194ENST00000574781ENST00000575156ENST00000576348ENSG00000237515ENST00000423335ENST00000482916ENST00000558583ENST00000566106ENSG00000242307ENST00000463867ENSG00000262235ENST00000576058ENSG00000262267ENST00000573369ENST00000576944ENSG00000262732ENST00000570663ENST00000575137ENSG00000262801ENST00000571619ENST00000574540CIL_0007DX_0002ENSMUSG00000022494ENSMUST00000023138ENSMUST00000170672ENSMUST00000182154ENSMUST00000182889ENSMUSG00000022545ENSMUST00000023206ENSMUST00000129049ENSMUST00000138527ENSMUST00000141024ENSMUST00000156393ENSMUSG00000091416ENSMUST00000171185ENSMUSG00000101565ENSMUST00000190074
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007DX_0001ENSG00000175595ENST00000311895ENST00000462862ENSG00000237515ENST00000423335ENST00000558583ENSG00000242307ENST00000463867ENSG00000262235ENST00000576058ENSG00000262267ENST00000573369ENST00000576944ENSG00000262732ENST00000570663ENST00000575137ENSG00000262801ENST00000571619ENST00000574540CIL_0007DX_0002ENSMUSG00000022494ENSMUST00000023138ENSMUST00000170672ENSMUST00000182154ENSMUST00000182889ENSMUSG00000022545ENSMUST00000023206ENSMUST00000129049ENSMUSG00000091416ENSMUST00000171185ENSMUSG00000101565ENSMUST00000190074
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000175595 ENST00000311895 0.583±0.00 0.513±0.00 0.574±0.00 1.201±0.22 0.258±0.00 0.630±0.15 0.863±0.25 0.248±0.00 0.883±0.48 0.838±0.60 0.478±0.00 0.518±0.38 0.526±0.15 1.843±0.21
ENST00000389138 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462862 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.387±0.00 N/A N/A N/A
ENST00000573018 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000574194 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000574781 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000575156 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000576348 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000237515 ENST00000423335 0.021±0.00 0.088±0.00 N/A N/A N/A N/A N/A N/A N/A 0.040±0.00 0.038±0.00 0.045±0.00 N/A N/A
ENST00000482916 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558583 0.061±0.00 0.167±0.00 N/A 2.385±0.48 0.154±0.00 0.860±0.00 0.188±0.00 0.355±0.00 0.217±0.00 0.150±0.00 0.195±0.17 0.418±0.27 0.313±0.03 0.785±0.57
ENST00000566106 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000242307 ENST00000463867 N/A 0.098±0.00 N/A 0.203±0.00 0.182±0.03 N/A 0.044±0.00 0.297±0.00 N/A 0.047±0.00 N/A 0.419±0.00 N/A 0.405±0.00
ENSG00000262235 ENST00000576058 N/A N/A N/A N/A N/A 0.645±0.62 0.206±0.00 0.120±0.00 0.026±0.00 N/A N/A N/A N/A N/A
ENSG00000262267 ENST00000573369 N/A N/A N/A 0.026±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.050±0.00
ENST00000576944 N/A N/A 0.357±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.125±0.05
ENSG00000262732 ENST00000570663 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.084±0.00 10.872±0.00 19.820±0.00
ENST00000575137 0.204±0.00 N/A 0.175±0.00 0.596±0.07 0.399±0.14 N/A 0.192±0.00 0.260±0.01 0.810±0.00 0.527±0.00 0.267±0.00 N/A N/A 2.848±2.14
ENSG00000262801 ENST00000571619 N/A 0.037±0.00 N/A N/A 0.037±0.00 0.069±0.00 N/A N/A 0.583±0.00 N/A N/A N/A N/A 0.090±0.01
ENST00000574540 N/A N/A 0.948±0.00 0.778±0.60 N/A N/A N/A 1.360±1.18 0.804±0.00 N/A 3.339±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022494 ENSMUST00000023138 0.066±0.01 0.290±0.13 0.242±0.07 3.801±0.44 0.048±0.01 N/A 0.031±0.01 0.070±0.04 0.081±0.03 0.064±0.01 0.010±0.00 0.278±0.11 0.079±0.06 0.069±0.04
ENSMUST00000170672 0.026±0.00 0.209±0.07 N/A 2.575±0.00 0.039±0.01 0.030±0.02 0.028±0.00 0.044±0.02 0.033±0.02 0.069±0.04 N/A 0.210±0.15 0.015±0.00 0.058±0.00
ENSMUST00000182154 0.043±0.00 0.299±0.00 N/A N/A N/A N/A 0.094±0.00 N/A 0.042±0.00 0.159±0.00 N/A 0.476±0.00 N/A N/A
ENSMUST00000182889 N/A 0.353±0.13 N/A N/A 0.120±0.06 N/A 0.029±0.00 0.057±0.02 0.031±0.01 0.113±0.00 N/A 0.423±0.20 0.111±0.04 0.047±0.00
ENSMUSG00000022545 ENSMUST00000023206 4.604±0.16 9.181±1.77 3.936±0.38 5.322±1.11 7.244±1.36 5.580±0.90 2.500±0.22 4.375±1.22 2.012±0.62 5.983±0.64 1.149±0.10 7.991±2.48 3.265±0.81 17.421±4.64
ENSMUST00000129049 0.892±0.00 1.947±0.57 2.143±0.13 1.298±0.39 1.780±0.98 1.089±0.20 0.297±0.00 1.219±0.37 0.331±0.06 1.030±0.00 0.258±0.13 1.234±0.39 0.463±0.12 0.705±0.00
ENSMUST00000138527 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141024 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156393 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000091416 ENSMUST00000171185 N/A N/A N/A N/A N/A N/A N/A 0.057±0.00 0.014±0.00 N/A N/A N/A 0.004±0.00 8.879±0.13
ENSMUSG00000101565 ENSMUST00000190074 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.000±0.48

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