C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: shisa family member 9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000237515 SHISA9 9606 + 16:12901620-13240413 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000423335 SHISA9-002 12901757-12911650 protein_coding
  ENST00000482916 SHISA9-003 12902879-12908910 processed_transcript
  ENST00000558583 SHISA9-001 12901620-13240413 protein_coding
  ENST00000566106 SHISA9-005 13082380-13235293 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000423335ENST00000558583
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000423335 0.021±0.00 0.088±0.00 N/A N/A N/A N/A N/A N/A 0.040±0.00 0.038±0.00 0.045±0.00 N/A N/A
ENST00000558583 0.061±0.00 0.167±0.00 2.385±0.48 0.154±0.00 0.860±0.00 0.188±0.00 0.355±0.00 0.217±0.00 0.150±0.00 0.195±0.17 0.418±0.27 0.313±0.03 0.785±0.57

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007DX CIL_0007DX_0001 CGP 16:12901620-13952345

Gene Ontology
GO IDEvidence TypeGO Description
GO:0008328 ISS ionotropic glutamate receptor complex
GO:0030054 IEA cell junction
GO:0032281 IEA alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex
GO:0032591 ISS dendritic spine membrane
GO:0045202 ISS synapse
GO:0048172 ISS regulation of short-term neuronal synaptic plasticity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045145 shisa9a shisa homolog 9a (Xenopus laevis) protein_coding Danio_rerio
ENSDARG00000052642 shisa9b shisa homolog 9b protein_coding Danio_rerio
ENSMUSG00000022494 Shisa9 shisa family member 9 protein_coding Mus_musculus

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