C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: shisa family member 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000170672 Shisa9-002 ENSMUSG00000022494 10090 + 16:11984581-12269949 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000170672
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000170672 0.026±0.00 0.209±0.07 2.575±0.00 0.039±0.01 0.030±0.02 0.028±0.00 0.044±0.02 0.033±0.02 0.069±0.04 0.210±0.15 0.015±0.00 0.058±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007DX CIL_0007DX_0002 CGP 16:11984113-13150617

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0008328 IDA ionotropic glutamate receptor complex
GO:0030054 IEA cell junction
GO:0032281 IDA alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex
GO:0032591 IDA dendritic spine membrane
GO:0045202 IDA synapse
GO:0048172 IDA regulation of short-term neuronal synaptic plasticity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000423335 SHISA9-002 protein_coding Homo_sapiens 0 819
ENST00000558583 SHISA9-001 protein_coding Homo_sapiens 0 1797
ENST00000566106 SHISA9-005 processed_transcript Homo_sapiens 0 307

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