C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nucleotide binding protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022503 Nubp1 10090 + 16:10411948-10424428 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000023146 Nubp1-001 10411948-10424428 protein_coding
  ENSMUST00000129280 Nubp1-003 10411954-10420551 retained_intron
  ENSMUST00000140157 Nubp1-005 10411949-10421672 processed_transcript
  ENSMUST00000142771 Nubp1-002 10411970-10424428 retained_intron
  ENSMUST00000143617 Nubp1-004 10421236-10423346 processed_transcript
  ENSMUST00000156338 Nubp1-006 10412064-10421437 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023146ENSMUST00000129280ENSMUST00000142771
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023146 6.819±2.00 4.079±1.21 6.773±2.53 10.650±0.82 4.898±1.23 7.662±1.77 1.902±0.61 5.365±0.50 8.450±3.78 5.138±1.62 1.815±0.31 6.499±2.19 9.062±3.68 4.481±1.49
ENSMUST00000129280 N/A 4.388±0.78 N/A N/A N/A 6.985±0.00 N/A N/A 4.822±0.71 N/A N/A 7.348±0.00 9.688±0.00 4.165±0.82
ENSMUST00000142771 1.874±0.00 1.052±0.12 1.530±0.00 N/A 1.305±0.12 1.241±0.00 0.595±0.00 N/A N/A 1.684±0.00 0.490±0.00 1.253±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00074Y CIL_00074Y_0002 CGP 16:10357948-10424428
CIL_00074Z CIL_00074Z_0002 CGP 16:10411948-10447362

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005737 IEA cytoplasm
GO:0005829 ISS cytosol
GO:0005886 IEA plasma membrane
GO:0006879 IEA cellular iron ion homeostasis
GO:0010826 IMP negative regulation of centrosome duplication
GO:0016049 IEA cell growth
GO:0016226 ISS iron-sulfur cluster assembly
GO:0046872 IEA metal ion binding
GO:0051536 ISS iron-sulfur cluster binding
GO:0051539 IEA 4 iron, 4 sulfur cluster binding
GO:0051642 IMP centrosome localization
GO:0070062 IEA extracellular vesicular exosome
GO:0072697 IMP protein localization to cell cortex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000055472 nubp1 nucleotide binding protein 1 (MinD homolog, E. coli) protein_coding Danio_rerio
ENSG00000103274 NUBP1 nucleotide binding protein 1 protein_coding Homo_sapiens

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