C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: coiled-coil domain containing 80
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022665 Ccdc80 10090 + 16:45093402-45127924 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000061050 Ccdc80-201 45094053-45127924 protein_coding
  ENSMUST00000099498 Ccdc80-001 45093612-45127665 protein_coding
  ENSMUST00000134924 Ccdc80-004 45093675-45095170 processed_transcript
  ENSMUST00000138048 Ccdc80-003 45093454-45094904 processed_transcript
  ENSMUST00000139509 Ccdc80-002 45093402-45094195 processed_transcript
  ENSMUST00000155800 Ccdc80-005 45093590-45094360 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000061050ENSMUST00000099498
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000061050 115.037±47.42 11.881±1.56 11.505±3.89 1.027±0.46 89.759±7.47 10.785±1.81 16.336±0.96 3.487±0.93 2.605±1.21 10.012±0.85 1.847±0.87 25.029±7.41 2.947±2.65 0.438±0.16
ENSMUST00000099498 23.535±6.58 2.804±0.57 13.695±3.06 0.637±0.20 17.721±0.00 2.273±1.02 2.909±0.69 0.692±0.14 1.344±0.91 1.432±0.00 1.362±0.61 7.490±3.77 7.611±3.35 0.290±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004ZV CIL_0004ZV_0002 CGP 16:45093402-45158706

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001968 IDA fibronectin binding
GO:0005539 IDA glycosaminoglycan binding
GO:0005604 IDA basement membrane
GO:0005614 IDA interstitial matrix
GO:0008201 IDA heparin binding
GO:0010811 IDA positive regulation of cell-substrate adhesion
GO:0030198 IDA extracellular matrix organization
GO:0031012 IDA extracellular matrix

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000000002 ccdc80 coiled-coil domain containing 80 protein_coding Danio_rerio
ENSDARG00000030975 ccdc80l1 coiled-coil domain containing 80 like 1 protein_coding Danio_rerio
ENSG00000091986 CCDC80 coiled-coil domain containing 80 protein_coding Homo_sapiens

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