C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coiled-coil domain containing 80
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000099498 Ccdc80-001 ENSMUSG00000022665 10090 + 16:45093612-45127665 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000099498
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000099498 23.535±6.58 2.804±0.57 13.695±3.06 0.637±0.20 17.721±0.00 2.273±1.02 2.909±0.69 0.692±0.14 1.344±0.91 1.432±0.00 1.362±0.61 7.490±3.77 7.611±3.35 0.290±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004ZV CIL_0004ZV_0002 CGP 16:45093402-45158706

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001968 IDA fibronectin binding
GO:0005539 IDA glycosaminoglycan binding
GO:0005604 IDA basement membrane
GO:0005614 IDA interstitial matrix
GO:0008201 IDA heparin binding
GO:0010811 IDA positive regulation of cell-substrate adhesion
GO:0030198 IDA extracellular matrix organization
GO:0031012 IDA extracellular matrix

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000206423 CCDC80-001 protein_coding Homo_sapiens 0 2902
ENST00000439685 CCDC80-003 protein_coding Homo_sapiens 0 2850
ENST00000461431 CCDC80-007 protein_coding Homo_sapiens 0 835
ENST00000469554 CCDC80-011 processed_transcript Homo_sapiens 3.00004e-41 172
ENST00000473959 CCDC80-010 processed_transcript Homo_sapiens 7e-17 92
ENST00000475181 CCDC80-012 processed_transcript Homo_sapiens 2e-20 104
ENST00000479368 CCDC80-006 protein_coding Homo_sapiens 0 667
ENST00000480275 CCDC80-009 processed_transcript Homo_sapiens 9e-17 92

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