C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coiled-coil domain containing 80
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000061050 Ccdc80-201 ENSMUSG00000022665 10090 + 16:45094053-45127924 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000061050
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000061050 115.037±47.42 11.881±1.56 11.505±3.89 1.027±0.46 89.759±7.47 10.785±1.81 16.336±0.96 3.487±0.93 2.605±1.21 10.012±0.85 1.847±0.87 25.029±7.41 2.947±2.65 0.438±0.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004ZV CIL_0004ZV_0002 CGP 16:45093402-45158706

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001968 IDA fibronectin binding
GO:0005539 IDA glycosaminoglycan binding
GO:0005604 IDA basement membrane
GO:0005614 IDA interstitial matrix
GO:0008201 IDA heparin binding
GO:0010811 IDA positive regulation of cell-substrate adhesion
GO:0030198 IDA extracellular matrix organization
GO:0031012 IDA extracellular matrix

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000206423 CCDC80-001 protein_coding Homo_sapiens 0 2915
ENST00000439685 CCDC80-003 protein_coding Homo_sapiens 0 2863
ENST00000461431 CCDC80-007 protein_coding Homo_sapiens 0 835
ENST00000469554 CCDC80-011 processed_transcript Homo_sapiens 6e-28 128
ENST00000475181 CCDC80-012 processed_transcript Homo_sapiens 8e-19 99
ENST00000479368 CCDC80-006 protein_coding Homo_sapiens 0 667

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