C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: eukaryotic translation initiation factor 4A2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022884 Eif4a2 10090 + 16:23107444-23114136 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000023599 Eif4a2-001 23107444-23113947 protein_coding
  ENSMUST00000077605 Eif4a2-002 23107759-23113946 protein_coding
  ENSMUST00000115341 Eif4a2-014 23107759-23113926 protein_coding
  ENSMUST00000123413 Eif4a2-003 23107777-23113930 nonsense_mediated_decay
  ENSMUST00000125553 Eif4a2-019 23109231-23110566 retained_intron
  ENSMUST00000125969 Eif4a2-022 23110233-23111626 retained_intron
  ENSMUST00000130113 Eif4a2-008 23107771-23110709 retained_intron
  ENSMUST00000130483 Eif4a2-018 23107779-23110247 retained_intron
  ENSMUST00000130775 Eif4a2-007 23107759-23109204 retained_intron
  ENSMUST00000131871 Eif4a2-006 23107778-23113947 nonsense_mediated_decay
  ENSMUST00000134816 Eif4a2-010 23107758-23109300 retained_intron
  ENSMUST00000135020 Eif4a2-015 23108582-23109470 retained_intron
  ENSMUST00000140017 Eif4a2-017 23107767-23111159 retained_intron
  ENSMUST00000141392 Eif4a2-012 23107759-23109093 retained_intron
  ENSMUST00000142031 Eif4a2-009 23107917-23110650 processed_transcript
  ENSMUST00000144493 Eif4a2-020 23110699-23112333 retained_intron
  ENSMUST00000147117 Eif4a2-005 23107754-23114136 nonsense_mediated_decay
  ENSMUST00000148085 Eif4a2-016 23109976-23112409 retained_intron
  ENSMUST00000149328 Eif4a2-013 23107777-23109173 retained_intron
  ENSMUST00000150117 Eif4a2-004 23110672-23111940 retained_intron
  ENSMUST00000152129 Eif4a2-011 23107773-23110318 retained_intron
  ENSMUST00000156227 Eif4a2-021 23110045-23110796 retained_intron
  ENSMUST00000168891 Eif4a2-201 23107479-23114117 protein_coding
  ENSMUST00000187168 Eif4a2-202 23107758-23113184 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023599ENSMUST00000077605ENSMUST00000115341ENSMUST00000123413ENSMUST00000131871ENSMUST00000144493ENSMUST00000187168
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023599 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.359±3.60
ENSMUST00000077605 46.533±14.20 27.484±5.39 92.577±18.50 53.509±23.26 34.121±5.46 24.552±3.53 22.468±2.55 24.016±2.98 45.178±27.25 46.299±6.96 17.397±1.83 41.866±28.12 51.761±12.29 11.500±2.05
ENSMUST00000115341 42.353±4.87 27.019±7.92 142.932±14.80 74.317±32.94 32.112±10.63 18.747±2.27 53.935±8.06 53.041±8.23 35.710±3.45 46.442±4.69 103.646±3.87 36.377±28.84 41.931±7.46 15.967±2.72
ENSMUST00000123413 N/A N/A N/A N/A N/A N/A N/A N/A 41.606±13.57 N/A N/A N/A N/A N/A
ENSMUST00000131871 N/A N/A N/A 61.170±23.13 N/A N/A N/A N/A 27.295±0.04 N/A N/A 73.890±0.00 41.103±11.25 21.232±0.00
ENSMUST00000144493 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 33.280±3.56 N/A N/A
ENSMUST00000187168 22.019±0.00 N/A N/A 60.572±0.00 25.944±14.33 19.158±4.54 19.100±0.42 17.193±0.95 15.101±1.15 N/A N/A 16.077±1.36 N/A 16.596±1.72

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008LA CIL_0008LA_0002 VISTA 16:22937415-23544553
CIL_000042 CIL_000042_0002 CGP 16:23057865-23114136
CIL_000041 CIL_000041_0002 CGP 16:23107444-23127737

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003743 IEA translation initiation factor activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0006200 IEA ATP catabolic process
GO:0006413 IEA translational initiation
GO:0008026 IEA ATP-dependent helicase activity
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016477 eif4a2 eukaryotic translation initiation factor 4A, isoform 2 protein_coding Danio_rerio
ENSG00000156976 EIF4A2 eukaryotic translation initiation factor 4A2 protein_coding Homo_sapiens

Loading