C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: eukaryotic translation initiation factor 4A2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000115341 Eif4a2-014 ENSMUSG00000022884 10090 + 16:23107759-23113926 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000115341
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000115341 42.353±4.87 27.019±7.92 142.932±14.80 74.317±32.94 32.112±10.63 18.747±2.27 53.935±8.06 53.041±8.23 35.710±3.45 46.442±4.69 103.646±3.87 36.377±28.84 41.931±7.46 15.967±2.72

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008LA CIL_0008LA_0002 VISTA 16:22937415-23544553
CIL_000042 CIL_000042_0002 CGP 16:23057865-23114136
CIL_000041 CIL_000041_0002 CGP 16:23107444-23127737

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003743 IEA translation initiation factor activity
GO:0005524 IEA ATP binding
GO:0006200 IEA ATP catabolic process
GO:0006413 IEA translational initiation
GO:0008026 IEA ATP-dependent helicase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000130781 eif4a2-001 protein_coding Danio_rerio 0 845
ENSDART00000134178 eif4a2-003 processed_transcript Danio_rerio 0 237
ENSDART00000147263 eif4a2-002 retained_intron Danio_rerio 0 237
ENST00000323963 EIF4A2-001 protein_coding Homo_sapiens 0 2820
ENST00000425053 EIF4A2-003 nonsense_mediated_decay Homo_sapiens 0 1657
ENST00000426808 EIF4A2-002 nonsense_mediated_decay Homo_sapiens 0 2200
ENST00000429589 EIF4A2-016 nonsense_mediated_decay Homo_sapiens 0 994
ENST00000440191 EIF4A2-004 protein_coding Homo_sapiens 0 2839
ENST00000441007 EIF4A2-008 protein_coding Homo_sapiens 0 316
ENST00000443963 EIF4A2-005 nonsense_mediated_decay Homo_sapiens 0 2200
ENST00000445596 EIF4A2-009 protein_coding Homo_sapiens 0 523
ENST00000458691 EIF4A2P4-001 processed_pseudogene Homo_sapiens 0 1531
ENST00000461021 EIF4A2-026 retained_intron Homo_sapiens 0 261
ENST00000465032 EIF4A2-013 retained_intron Homo_sapiens 0 623
ENST00000465222 EIF4A2-010 retained_intron Homo_sapiens 0 196
ENST00000465267 EIF4A2-014 retained_intron Homo_sapiens 0 643
ENST00000465792 EIF4A2-022 retained_intron Homo_sapiens 0 398
ENST00000466362 EIF4A2-020 retained_intron Homo_sapiens 0 462
ENST00000467585 EIF4A2-019 retained_intron Homo_sapiens 0 287
ENST00000468362 EIF4A2-007 retained_intron Homo_sapiens 0 809
ENST00000475409 EIF4A2-023 retained_intron Homo_sapiens 0 233
ENST00000475653 EIF4A2-017 retained_intron Homo_sapiens 0 780
ENST00000485101 EIF4A2-006 retained_intron Homo_sapiens 0 1171
ENST00000486805 EIF4A2-012 retained_intron Homo_sapiens 0 387
ENST00000491473 EIF4A2-011 retained_intron Homo_sapiens 0 196
ENST00000492144 EIF4A2-021 retained_intron Homo_sapiens 0 891
ENST00000494445 EIF4A2-025 retained_intron Homo_sapiens 0 281
ENST00000495049 EIF4A2-015 retained_intron Homo_sapiens 0 364
ENST00000496382 EIF4A2-027 retained_intron Homo_sapiens 0 678
ENST00000497177 EIF4A2-024 retained_intron Homo_sapiens 5e-25 119
ENST00000498746 EIF4A2-018 protein_coding Homo_sapiens 0 588
ENST00000525903 EIF4A2P3-001 processed_pseudogene Homo_sapiens 0 765
ENST00000587313 RP11-773H22.2-001 processed_pseudogene Homo_sapiens 0 905

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