C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: eukaryotic translation initiation factor 4A2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000077605 Eif4a2-002 ENSMUSG00000022884 10090 + 16:23107759-23113946 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000077605
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000077605 46.533±14.20 27.484±5.39 92.577±18.50 53.509±23.26 34.121±5.46 24.552±3.53 22.468±2.55 24.016±2.98 45.178±27.25 46.299±6.96 17.397±1.83 41.866±28.12 51.761±12.29 11.500±2.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008LA CIL_0008LA_0002 VISTA 16:22937415-23544553
CIL_000042 CIL_000042_0002 CGP 16:23057865-23114136
CIL_000041 CIL_000041_0002 CGP 16:23107444-23127737

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0005524 IEA ATP binding
GO:0006200 IEA ATP catabolic process
GO:0008026 IEA ATP-dependent helicase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000130781 eif4a2-001 protein_coding Danio_rerio 0 715
ENSDART00000134178 eif4a2-003 processed_transcript Danio_rerio 0 237
ENSDART00000147263 eif4a2-002 retained_intron Danio_rerio 0 237
ENST00000323963 EIF4A2-001 protein_coding Homo_sapiens 0 1672
ENST00000425053 EIF4A2-003 nonsense_mediated_decay Homo_sapiens 0 1858
ENST00000426808 EIF4A2-002 nonsense_mediated_decay Homo_sapiens 0 1203
ENST00000429589 EIF4A2-016 nonsense_mediated_decay Homo_sapiens 0 965
ENST00000440191 EIF4A2-004 protein_coding Homo_sapiens 0 1657
ENST00000441007 EIF4A2-008 protein_coding Homo_sapiens 0 331
ENST00000443963 EIF4A2-005 nonsense_mediated_decay Homo_sapiens 0 1203
ENST00000445596 EIF4A2-009 protein_coding Homo_sapiens 0 538
ENST00000458691 EIF4A2P4-001 processed_pseudogene Homo_sapiens 0 1323
ENST00000461021 EIF4A2-026 retained_intron Homo_sapiens 0 263
ENST00000465032 EIF4A2-013 retained_intron Homo_sapiens 0 638
ENST00000465222 EIF4A2-010 retained_intron Homo_sapiens 0 196
ENST00000465267 EIF4A2-014 retained_intron Homo_sapiens 0 623
ENST00000465792 EIF4A2-022 retained_intron Homo_sapiens 0 398
ENST00000466362 EIF4A2-020 retained_intron Homo_sapiens 0 462
ENST00000467585 EIF4A2-019 retained_intron Homo_sapiens 0 281
ENST00000468362 EIF4A2-007 retained_intron Homo_sapiens 0 809
ENST00000475409 EIF4A2-023 retained_intron Homo_sapiens 0 233
ENST00000475653 EIF4A2-017 retained_intron Homo_sapiens 0 780
ENST00000485101 EIF4A2-006 retained_intron Homo_sapiens 0 2036
ENST00000486805 EIF4A2-012 retained_intron Homo_sapiens 0 366
ENST00000491473 EIF4A2-011 retained_intron Homo_sapiens 0 196
ENST00000492144 EIF4A2-021 retained_intron Homo_sapiens 0 893
ENST00000494445 EIF4A2-025 retained_intron Homo_sapiens 0 455
ENST00000495049 EIF4A2-015 retained_intron Homo_sapiens 0 379
ENST00000496382 EIF4A2-027 retained_intron Homo_sapiens 0 571
ENST00000497177 EIF4A2-024 retained_intron Homo_sapiens 0 302
ENST00000498746 EIF4A2-018 protein_coding Homo_sapiens 0 582
ENST00000525903 EIF4A2P3-001 processed_pseudogene Homo_sapiens 0 704
ENST00000587313 RP11-773H22.2-001 processed_pseudogene Homo_sapiens 0 255

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